Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq2 127 2e-24 >seq2 Length=63311091 Score = 127 bits (140), Expect = 2e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 ||||| ||||| || || |||||||||||||| || || |||||||| || |||||||| Sbjct 46426739 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAGGGC 46426680 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| || |||||||| ||||| || || || | || |||| Sbjct 46426679 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 46426620 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 || || ||||| || | ||| ||||| ||||| | |||||| ||| Sbjct 46426619 ACATAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAGG 46426575 Score = 111 bits (122), Expect = 1e-19 Identities = 138/184 (75%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| |||||||| ||||||||||||||||| || ||||| ||||||| || Sbjct 46423113 CATATCTTTGTATTCTGCTCCAAAATGCCTCCATTGGAAACCATACACTGGTCCCAAATC 46423054 Query 27549 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 ||||| || || ||||| ||| ||| ||| |||| || || | || || || || | Sbjct 46423053 ACCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGCGACCCATTAGCAT 46422995 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 27667 |||| ||||| || || || | || ||||| |||| ||||| || || || || || | Sbjct 46422994 CCCAAATCTTCACACCTTTTGCAGAAAGCTCCTTGGCATTTGTAGAACC-CT-ACAAAAC 46422937 Query 27668 ACAG 27671 |||| Sbjct 46422936 ACAG 46422933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369482854787186