Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq12 104 3e-17 seq2 98.7 1e-15 >seq12 Length=17335395 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | ||| |||||||| ||||| |||||||||| ||| | || || Sbjct 8985320 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 8985379 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| || | || ||||| ||||| ||||| |||||||| || || || || || Sbjct 8985380 AGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATGCCTTCCACTGCTGCAAAGGCT 8985439 Query 46774 AC 46775 || Sbjct 8985440 AC 8985441 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCT 46383 ||||| |||||||| | || ||||||||||| || ||||| || || || || |||||| Sbjct 8984119 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTTGTCTTGCCT 8984178 Query 46384 TCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 |||| || || |||||||| || ||||| ||||| Sbjct 8984179 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 8984213 >seq2 Length=63311091 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || || || || | |||||||| | || | ||| || Sbjct 19108485 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAAGCCCCTCTTCTTC 19108426 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || || || || |||||||| |||||||| || || || || || Sbjct 19108425 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 19108366 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 19108365 ACCACTCTCTCACC 19108352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712886223457920