Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq21 147 5e-30 seq27 105 2e-17 >seq21 Length=13582449 Score = 147 bits (162), Expect = 5e-30 Identities = 167/223 (75%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || ||||| || ||||| ||||||||||| || | | || | |||||| Sbjct 1694841 AGGACAAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 1694782 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| |||||||| || Sbjct 1694781 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCC 1694722 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| || ||||| || || Sbjct 1694721 TGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCAAGGGTGATG 1694665 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCCT 152112 || |||||||| || ||||||||||||| ||||||||| |||| Sbjct 1694664 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATTTTTCCCT 1694622 Score = 123 bits (136), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || ||||| ||||| || || |||||||| || | | || | |||||| Sbjct 1695297 AGGACAAGGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCT 1695238 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| |||||||| || Sbjct 1695237 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCC 1695178 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||||| |||| | | |||| ||| ||| ||||| ||||| ||| Sbjct 1695177 TGGATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCGACTTCCAGAGTGATA 1695121 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||| || |||| |||||| Sbjct 1695120 GTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 1695086 Score = 120 bits (132), Expect = 7e-22 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | || |||||||| || ||||| || || ||||||||||| || | | || Sbjct 1695078 CTGAGGCGCAGCACAAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTA 1695019 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || || || ||||| || |||||||||||||| | | ||| ||| Sbjct 1695018 CGGCCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCT 1694959 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| || || || || ||||| |||| | | |||| ||| ||| || ||| Sbjct 1694958 TCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCGACCTCA 1694902 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCC 152111 || || || || ||||| || || ||||| || |||| ||||||| |||| Sbjct 1694901 AGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATTCCACCC 1694851 >seq27 Length=10010218 Score = 105 bits (116), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || |||||||| || || || || |||||||| || | | || | ||||||| Sbjct 3545039 AGCACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGCCCATCT 3545098 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || |||||||| || Sbjct 3545099 TCGAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCC 3545158 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || ||||| || || Sbjct 3545159 TGGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATG 3545215 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || |||||||| |||| |||||| || Sbjct 3545216 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 3545253 Score = 102 bits (112), Expect = 2e-16 Identities = 159/226 (70%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || |||||||| || || || || |||||||| || | | || Sbjct 3544801 CCTGAGGCGCAGCACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCTGACAGGGT 3544860 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||||||| || || || ||||| || |||||||||||||| | | || || Sbjct 3544861 GCGCCCATCTTCGAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGAGGAATGCC 3544920 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || || ||| | || | |||| ||| ||| ||||| Sbjct 3544921 TTCCTTATCCTGGATCTTGGCCTTCACATTTTCAATAGTGTC---ACTGGGCTCGACTTC 3544977 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || ||||| || || ||||| || |||| ||||||| Sbjct 3544978 CAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATT 3545023 Score = 96.9 bits (106), Expect = 8e-15 Identities = 135/188 (72%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 151920 TGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGC 151979 || |||||||| |||| | || | ||| ||||| || ||||| || ||||| ||| Sbjct 3544610 TGAATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAGC 3544669 Query 151980 CTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACG 152039 ||||||||||| | | || |||||||| || || || || || || |||| | | Sbjct 3544670 CTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATG 3544729 Query 152040 CTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 |||| ||| || || |||||||| || || ||||| || || |||||||||||| Sbjct 3544730 GTGTC---ACTGGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAG 3544786 Query 152097 ACCTGCAT 152104 | |||||| Sbjct 3544787 ATCTGCAT 3544794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153740881323426