Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq27 143 2e-29 seq21 120 2e-22 >seq27 Length=10010218 Score = 143 bits (158), Expect = 2e-29 Identities = 175/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || ||||| | || |||||||||||| ||| ||||| || |||||||| || Sbjct 3545020 CATTCCTCCCCTCAGGCGCAGCACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTC 3545079 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || || |||||||| || |||||||||| | |||||| |||| Sbjct 3545080 TGACAGGGTGCGCCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGG 3545139 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| |||| | |||| | |||||||| || | Sbjct 3545140 GGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCT 3545198 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | ||||| | || || ||||| || || ||||||||||| ||||| |||||| || Sbjct 3545199 CAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 3545254 Score = 134 bits (148), Expect = 1e-26 Identities = 143/186 (77%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 44153 TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAA 44212 || |||||||| |||| || |||| |||| |||||||||||||| |||||||||| Sbjct 3544610 TGAATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAGC 3544669 Query 44213 CGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTAT 44271 | |||||| |||| || | |||||||| ||| ||||| |||| | |||| | || Sbjct 3544670 CTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCAAT 3544728 Query 44272 GGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGAT 44331 |||||| || ||||||||| | || || ||||| || || ||||||||||||||||| Sbjct 3544729 GGTGTCACTGGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGAT 3544788 Query 44332 TTGCAT 44337 ||||| Sbjct 3544789 CTGCAT 3544794 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || |||||||||||| ||| ||||| || |||||||| || Sbjct 3544792 CATCCCACCCCTGAGGCGCAGCACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTC 3544851 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || || |||||||| || || || |||| | |||||| |||| Sbjct 3544852 TGACAGGGTGCGCCCATCTTCGAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGG 3544911 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| ||| ||||| ||||| || | || ||||| || || Sbjct 3544912 AGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCAATAGTGTCACTGGGCTC 3544971 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| || || ||||| || || |||||||| || ||||| ||||| Sbjct 3544972 GACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 3545022 >seq21 Length=13582449 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | ||| | || || ||||| || ||| || || ||||||||||| || Sbjct 1694860 CATTCCACCCCGCAGGCGCAGGACAAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTC 1694801 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || | || ||||||||||| || |||||||||| | |||||| || | Sbjct 1694800 AGACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG 1694741 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| ||| ||||| ||| | | | |||||||| || || Sbjct 1694740 AGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTC 1694681 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || ||||| ||||| ||||||||||||||||| ||||| Sbjct 1694680 GACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1694630 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || || ||||| || || |||||| || |||||||| || | Sbjct 1695312 CCACCCCGCAGACGCAGGACAAGGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAC 1695253 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || ||||||||||| || |||||||||| | |||||| || | ||| Sbjct 1695252 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 1695193 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | |||||||| ||| ||||| || | | |||| | |||||||| || || || Sbjct 1695192 ATGCCTTCCTTATCCTGGATCTT-GGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGAC 1695134 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || ||||| || || |||||||| || ||||| ||||| Sbjct 1695133 TTCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 1695086 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | || ||| || || || || ||||| ||||||||||| || Sbjct 1695088 CATCCCACCTCTGAGGCGCAGCACAAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTC 1695029 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || | || ||||||||||| || || || |||| | |||||| || | Sbjct 1695028 AGACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCAGG 1694969 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| ||| ||||| || | | |||| | |||||||| || | Sbjct 1694968 AGGGATGCCTTCCTTATCCTGGATCTT-GGCCTTGACGTTCTCAATGGTGTCACTGGGCT 1694910 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | || || ||||| || || |||||||| || ||||| ||||| Sbjct 1694909 CGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 1694858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359966681807502