Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq93 176 6e-39 seq56 100 4e-16 >seq93 Length=1890510 Score = 176 bits (194), Expect = 6e-39 Identities = 217/297 (73%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || |||||| | |||| || ||| | | || Sbjct 1179424 GGAAGGCAGTGAAGGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCTG 1179483 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||||||| | || ||||| | || |||||||||||||||||||||||| | |||| Sbjct 1179484 TGTTGACGATGTCAAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCAGGGG 1179543 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| | || |||| || || || |||||||| || ||||||| || | ||| Sbjct 1179544 AGCAGATGGCATTGCCCATCAGCCCCTTCAGGGAGAATGGTGCCCCCATTTCCACCATGG 1179603 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || |||||||| ||| |||||||| ||||||| | || | ||||||||||| Sbjct 1179604 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 1179663 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || | ||| || || || || || || || || ||||| |||||||||| Sbjct 1179664 TGGCATCAATGTCCCCATACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 1179720 Score = 125 bits (138), Expect = 1e-23 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| || ||||||||||| || ||||| || ||| || || || | || || || Sbjct 1181361 ATGAGACGGGTGGTCTGGAAGAGCTGCTCATCGTCCCAGTCAGGGTGCTGGTGCTTGAGC 1181420 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 |||||||| || | ||||||||| | |||||||| ||||| |||||||| ||||| || Sbjct 1181421 ACATCGCAGACGCGGTTGTGTTCGCGCAGCCAGATCGTGGCATACATCATCAGCCCTGGC 1181480 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 ||||| ||||| |||| || || |||| | ||| || || ||||| | ||| || Sbjct 1181481 ACCAGACCAAACACCTCCTGCCCCACAGAGAACTGCAGGTGCTCAGGCACATGGGGCGGG 1181540 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 || | ||| | |||| ||| || | || || |||||||| || | |||||| Sbjct 1181541 TACAGCATCTCTGCCTGTGTGTCCCGCACGGTCGGCGGGTACATTTCTCCATTGATCATC 1181600 Query 9484 TG 9485 || Sbjct 1181601 TG 1181602 >seq56 Length=3924218 Score = 100 bits (110), Expect = 4e-16 Identities = 208/310 (67%), Gaps = 0/310 (0%) Strand=Plus/Plus Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336 |||| || || ||||||| | |||| ||| ||| || ||| || || || || Sbjct 1645958 CATCCGGCACGTGGAACGCCACGTACGGGCACTTCTTCACATTGAGGCACACGAGCTTCT 1646017 Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396 | | ||| |||| || ||| | || || |||| || || |||||||| |||| Sbjct 1646018 TGAGGGATGCCGTCTTAACAATCTCAAAGCCGGTTGCTCCACCAAATGTGCTGGGTTTCC 1646077 Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456 ||||| | |||||||||||| || | | || || || ||||| || ||||| || | Sbjct 1646078 AGTACTCTGGGGAGCAGATGGGATTTCCAAAAAGCCCCTTTAGGGAAAATGGAGCTCCGA 1646137 Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516 ||| | ||||| || || || ||| |||||| |||| || || | || || || | Sbjct 1646138 TCTCCACCATGCTTTCCCCAAAAATGCTGTTGGGTTGGGGTTTCTCAAGCAGCAAGCCTG 1646197 Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCT 8576 ||| | ||||| ||| || | |||||| || || | ||||| || || | || | Sbjct 1646198 GGTAAAACTCCAGAGCATCAATGTCTCCATACAGCTCTTCCAGTTCTGCTGCCTTTTCTT 1646257 Query 8577 TTTCTCCTGT 8586 |||||||| Sbjct 1646258 CCTCTCCTGT 1646267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716828357050240