Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq21 150 4e-31 seq27 123 6e-23 seq98 95.1 3e-14 >seq21 Length=13582449 Score = 150 bits (166), Expect = 4e-31 Identities = 165/217 (76%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || |||||||| || || || || || || |||||||| ||||| || Sbjct 1694627 AAAATGC---AGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGA- 1694682 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||||||||| ||||| ||||| ||||| || ||||| ||||||| Sbjct 1694683 -GCCCAGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTC 1694741 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | |||||||| | || ||||| || || || ||||| |||||||| | || || | | Sbjct 1694742 CTGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTG 1694801 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || ||| |||| |||||||| || ||||| ||||| Sbjct 1694802 ACTACAACATCCAGAAAGAATCCACTCTGCACCTTGT 1694838 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || || || || || || |||||||| ||||| || || ||| Sbjct 1694861 CAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGA--GCCCAGTG 1694918 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| ||||| || ||||| |||||||| ||||||| Sbjct 1694919 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAGC 1694978 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || ||||| || || ||||| |||||||| | || || | || || ||| Sbjct 1694979 AGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAACA 1695038 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || ||||| || ||||||||||| || | |||||| Sbjct 1695039 TCCAGAAGGAATCTACCCTGCATCTTGTGCTGCGCCTCAGA 1695079 Score = 122 bits (134), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || || || || || || ||||| || || || || || ||| Sbjct 1695089 CAGATCTTTGTCAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTCGA--GCCCAGTG 1695146 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| ||||| || ||||| |||||||| ||||||| Sbjct 1695147 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAGC 1695206 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 1695207 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAACA 1695266 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || || ||||| ||||| ||||| Sbjct 1695267 TTCAGAAGGAGTCAACTCTGCACCTTGT 1695294 >seq27 Length=10010218 Score = 123 bits (136), Expect = 6e-23 Identities = 162/222 (73%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | || || ||||| || || || || || || |||||||| |||| Sbjct 3545258 AGGTCAACATGC---AGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGG 3545202 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 | || || ||| |||||||||||||||| || ||||| ||||| || ||||| || Sbjct 3545201 TTGA--GCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 3545144 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || |||||||| | || ||||| || || || |||||||||||||| | || || Sbjct 3545143 TCCCCCAGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGGCGCACCCT 3545084 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||| | || || ||||| || || || || || Sbjct 3545083 GTCAGACTACAACATTCAGAAGGAATCCACTCTTCACCTGGT 3545042 Score = 104 bits (114), Expect = 6e-17 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || || || || || || |||||||| || || || || ||| Sbjct 3545019 CAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTCGA--GCCCAGTG 3544962 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || || || || || ||||| ||||| || ||||| || ||||| ||||||| Sbjct 3544961 ACACTATTGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCAGACCAGC 3544902 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || ||||| || || |||||||||||||| | || || | || || ||| Sbjct 3544901 AGAGGCTGATTTTCGCTGGCAAGCAGCTCGAAGATGGGCGCACCCTGTCAGACTACAACA 3544842 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 | || || ||||| || || || || || || | ||||| Sbjct 3544841 TTCAGAAGGAATCCACTCTTCACCTGGTGCTGCGCCTCAG 3544802 >seq98 Length=1773073 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/103 (82%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || || || || ||||| |||||||||||||||| ||| || | Sbjct 1267607 CAGATCTTCGTGAAGACCCTGACGGGCAAAACCATCACCCTCGAGGTGG--AGCCCAATG 1267664 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||||||||||| ||| ||||| |||||||| ||||| Sbjct 1267665 ACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGG 1267707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203647824310764