Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq34947 122 6e-23 seq8464 98.7 7e-16 >seq34947 Length=23117 Score = 122 bits (134), Expect = 6e-23 Identities = 93/110 (85%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || ||| |||| || || | ||||||||||||||||||||| || ||||||||||| Sbjct 19983 CTTGAGCTCCGTGCTAAGCACTATATTAATTCTGCCTTTTAAAGGACGATTCTTCTCAGG 20042 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| || ||| ||||||| |||||| |||||||||| ||| Sbjct 20043 AATGGAGAACCAGGTTTTTCTACCCATTATCACTGCATTCTGTTTACCTG 20092 >seq8464 Length=80123 Score = 98.7 bits (108), Expect = 7e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| |||||||||||||| ||||||||||| || ||||| || ||||| | ||| || | Sbjct 1976 CTTTGTATTCTGCTCCGAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCT 1917 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| | ||||| | || || | || | |||||||| |||||||||| Sbjct 1916 CCTCTCTGGTACTGAAACCCTGCTTGTCCAGGAACTCACGTGATCCATTAGCATCCCAAA 1857 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTG 102181 | | ||| || ||| || ||||||||| Sbjct 1856 TCTTCACACCCTTTGCAGAGAGCTCTTTG 1828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360993168089357