Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq5930 118 1e-21 seq34349 109 7e-19 >seq5930 Length=31701 Score = 118 bits (130), Expect = 1e-21 Identities = 169/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 ||||||||| |||||||||| | |||||||||||| ||||| |||||| || ||| Sbjct 4263 GAACTTCTCAAAGTTCCAGGAGATGTCGTTGCGGCAGACTGGCGACCAGATGATATACTG 4322 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAA 83262 |||| | ||| |||| | |||||| || ||||| || ||| ||| || Sbjct 4323 CGGGTTGGTCATCAGCGAGGAGGGGTCGTCATGCGGAAAGGGCAGCGCTTCTTTTAGTAA 4382 Query 83263 GGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTT 83322 || |||||| || ||||| | ||||| |||||||||||||| || | || || || Sbjct 4383 GGTGAAGAGGGGGTGTGCATTCTTCCCGTTCACCTCGCACTTCTCAAACATGATGAAATT 4442 Query 83323 CGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTC 83380 |||| | | || || || ||||| || | || ||| || ||| |||||| ||||| Sbjct 4443 TGGCTTGTACCCATTGCCGGGACGAACATACTGCAGTGACAGCAGGATCTCCTCATTC 4500 >seq34349 Length=596 Score = 109 bits (120), Expect = 7e-19 Identities = 118/154 (77%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || |||||| || |||||||| || ||||| || ||||| ||||||| || | || Sbjct 356 TTACCTGGTAGCCAAACTGGTTGCAAGGGAAGCCCAGCACGACCAGCCGGCGGGGA--TA 413 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 | | | ||||||| ||| | ||| ||||| ||||| |||||| | |||||||| |||| Sbjct 414 GCGGGCT-TGCAGCTGGTTGAGCTGGGTGTAATCCCGCACCGTGGTCCCTCAGAGCGACG 472 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 | |||||||||||||| | || |||||||| || Sbjct 473 CCACGTTCTCGATGAGGACCACGCGGCCCCGGAA 506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608350803074280