Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq5826 129 5e-25 seq15821 123 2e-23 >seq5826 Length=5185 Score = 129 bits (142), Expect = 5e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||| ||||||| || ||||| || || |||||||| || || |||||| ||| Sbjct 4362 CAGCACTAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 4421 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || |||||| ||||||| | ||||||||| ||||| ||||| |||||||| Sbjct 4422 TTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTC 4481 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | |||||| || ||| || || | ||| | || Sbjct 4482 CTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATTGT 4541 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||||||| || || ||||| ||||||||| Sbjct 4542 CTTGCCGGTCAGGGTCTTCACAAAGATCTGCATG 4575 >seq15821 Length=35697 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || |||||||| |||||||| ||| || ||||| ||| || ||||| || ||| Sbjct 910 GTGGATTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTGCCA 851 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || | ||||||||| || || ||||| |||||||| || || || Sbjct 850 GCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 791 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| || ||| ||||||| ||| | || ||||||||||| || Sbjct 790 ACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 731 Query 118722 TTTACAAAAATCTGCATG 118739 || ||||| ||||||||| Sbjct 730 TTCACAAAGATCTGCATG 713 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || |||||||| || || |||||| ||| || ||||| || ||| Sbjct 682 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCTTCCAGCTGCTTGCCA 623 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || || | ||||||||| || || ||||| |||||||| || || || Sbjct 622 GCAAAAATAAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 563 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| || ||| || || | ||| | || || || ||||| || Sbjct 562 ACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTCTTCCCAGTCAGGGTC 503 Query 118722 TTTACAAAAATCTGCATG 118739 || ||||||||||||||| Sbjct 502 TTCACAAAAATCTGCATG 485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433520526740044