Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq13775 132 9e-26 >seq13775 Length=43108 Score = 132 bits (146), Expect = 9e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 51895 GCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATA 51954 || ||||||| ||| ||| | || ||||| || |||||||||||||| || || ||||| Sbjct 17782 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATACTTGGATACAGTGTTCTTCATC 17723 Query 51955 CTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTT 52014 || ||||| |||||||| ||| ||||||| || || || ||||| ||||| || ||||| Sbjct 17722 CTGAGGAAGAAATTTAACCAGATTAGTTTCCTCCATGTCTATCACCATTTCACCATGTTC 17663 Query 52015 ACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 || | | ||||| |||||||| ||| |||| || || || Sbjct 17662 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 17622 Score = 102 bits (112), Expect = 2e-16 Identities = 104/133 (78%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || ||||||||||||||| | ||||| ||||| ||||| |||||||||| |||||||| Sbjct 15418 GCTTTTTTTGGAGCTCAGATGAATTCGTTTATTCATGTCATTATGTACATGTATTATGGA 15359 Query 52117 ATGGCCGCTTGTGGTCCT-ATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || ||||| ||| | |||||||| || || |||||||| || || | || || Sbjct 15358 TTAGCTGCCTGTGGCCCTAAATTTCAGAAA-TACCTGTGGTGGAAGCGATACTTGACCAT 15300 Query 52176 AATGCAGTTGGTA 52188 | |||| ||||| Sbjct 15299 ATTGCAAATGGTA 15287 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 14785 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 14726 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 || |||||||| || ||| || ||| ||||| | || | ||||| || ||||||| Sbjct 14725 CCCTAAATGGATGCACTGGAGTGTCATTTTCTATGCCATCACCTTCATTTTCTTGTTTGG 14666 Query 52305 TAACTTCTATTTTAGAACATACAAG 52329 ||||||||| | | | ||||| ||| Sbjct 14665 TAACTTCTACTATCGGACATATAAG 14641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922520477564280