Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq15821 116 2e-21 seq5826 109 4e-19 >seq15821 Length=35697 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| || ||||| | || |||||| || ||||||||||||||| Sbjct 940 CCACCCCGCAGGCGCAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCGGAC 881 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| ||||| || |||| |||||| || ||| Sbjct 880 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGA 821 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | || | || | || | | || || Sbjct 820 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 761 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| |||||||| || || ||||||||||||||||| Sbjct 760 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 714 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | |||||| || || | || ||| ||||| ||||||||||| ||| Sbjct 712 CCACCTCTCAGGCGCAGCACGAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 653 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| || ||||| |||| |||||| || ||| Sbjct 652 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGATCAGGGGGA 593 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | || | || | || | | || || Sbjct 592 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACT 533 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || || || || |||||||| |||||||| Sbjct 532 TCAAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACAAAAATCTGCAT 486 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| || ||||| | || |||||| || ||||||||||| ||| Sbjct 484 CCCCCCCTCAGGCGCAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAC 425 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| ||||| |||| |||||| || ||| Sbjct 424 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGTGCAGCCTCTGCTGATCAGGGGGA 365 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | || | || | || | | || || Sbjct 364 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 305 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || || ||||||||||||||||| Sbjct 304 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 258 >seq5826 Length=5185 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGT 34235 |||||||| ||| | || ||| ||||| ||||||||||| ||| || || || ||| Sbjct 4590 CAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAAGGTG-CGCCCGT 4648 Query 34236 CGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGT 34295 | |||| ||||||||| || || || |||| ||||||||| ||| | || ||||||| Sbjct 4649 CTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGT 4708 Query 34296 CGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 | ||||| ||| | | | || | || | | || || |||| ||||||| Sbjct 4709 CCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGG 4768 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | ||||| || || || ||||||||||||||||| Sbjct 4769 TCTTGCCAGTTAGGGTCTTCACAAAGATCTGCAT 4802 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||||| ||| | || ||| ||||| ||||||||||| ||||| || | || Sbjct 4818 CAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 4877 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||||||||| ||||| ||||||| |||||| || || | || |||||||| Sbjct 4878 TTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTC 4937 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | || | || | | || || |||| |||||||| Sbjct 4938 CTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 4997 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || ||||| ||||||||||| Sbjct 4998 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 5030 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | |||||| | ||| | || || ||||| ||||||||||| ||| Sbjct 4348 CCACCCCTCAGGCGCAGCACTAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4407 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| ||||| ||||||| |||||| || || Sbjct 4408 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGGAGGA 4467 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | || | || | || | | || || Sbjct 4468 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACT 4527 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| || |||||||| || || ||||||||||||||||| Sbjct 4528 TCCAGGGTGATTGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322841238453920