Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq31484 239 3e-58 seq35106 100 2e-16 >seq31484 Length=671 Score = 239 bits (264), Expect = 3e-58 Identities = 467/683 (68%), Gaps = 18/683 (3%) Strand=Plus/Plus Query 107784 GCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGA-GACTTTCAAAGA 107842 ||||| |||||||| ||||| |||||||| || ||||||||||| ||||| || || Sbjct 2 GCCCCACAGAACATCTACTGCGTCCACGTTGACAGCAAGTCCCCAGACGACTTCCAG-GA 60 Query 107843 GGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCC 107902 ||| || |||||| ||||||||||||||||||| ||||||| ||| Sbjct 61 GGCCGTGCGGGCCATCGCAGCCTGCTTCCCCAATGTCTTTGTGGCCAGCCGCCTGGAAAA 120 Query 107903 GGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCT 107962 ||||| ||||||||||||||| | |||| |||||||| ||||| ||| | ||| |||| Sbjct 121 CGTGGTCTATGCCTCCTGGTCCCGCCTGCAGGCTGACCTCAACTGCATGCAGGACCTGCT 180 Query 107963 CCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAA 108022 |||||| | |||| ||| | ||| | || || || ||||| || || |||||||| || Sbjct 181 GCAGAGCCCCGTGCGGTGGCACTACATCCTCAACACCTGCGGCACCGATTTCCCCATCAA 240 Query 108023 GACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTC 108082 |||||| |||||||| |||| |||| ||| || || |||| ||||||| |||||||| Sbjct 241 GACCAACGCCGAGATCGTCCGCACCCTGAAGCTGCTGCAGGGGCAGAACAGCATGGAGTC 300 Query 108083 TGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACAC 108142 ||| || || | ||| | | |||||| | || | | | || || | ||| Sbjct 301 GGAGAAGCCCTCGGCCCTCAAGCAGCAGCGCTGGCAGTATCACCACGAAGT-AGGGACGT 359 Query 108143 AC-TGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAG 108201 | | | || || || | |||| | || || || | | ||||||||||| | Sbjct 360 TCATCTCCCGGACAGCCACGGAGAAGCAGCCACCGCCCCTCAGCTCGCCCATGTTCACGG 419 Query 108202 GGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAAT 108261 | | || || | |||| | || ||||| || || || |||| || ||||| Sbjct 420 GCAGCGCGTACATCGTGGTGACGCGGGCCTTCGTGCAGCACATCTTTGAGAACCCCGCGG 479 Query 108262 CCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCA 108321 | || | | ||||||| ||| |||||||| ||||| ||||| ||| ||||||||| Sbjct 480 CGCAGCAGTTCCTCGAATGGGCCAAGGACACCTACAGCCCTGACGAGCACGTCTGGGCCA 539 Query 108322 CCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCT 108381 ||| ||| || ||| || || || | | | | ||||| || | | Sbjct 540 CCC-TCAACG----CCG-GGCAGCATGCCCCCG--------AATGACAAGTTCCAGCTGT 585 Query 108382 CAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCA 108441 | ||||||| || | | | || ||||||||||| |||| ||||| || ||||| Sbjct 586 CGGACATGAACGCGCTGCCGCGCCTGGTCAAGTGGCACTACCTGGAGGGCGACACCAGCA 645 Query 108442 TGGGGGCGCCTTATGCACCCTGC 108464 ||| ||||| || | |||||| Sbjct 646 AGGGCGCGCCCTACCCGCCCTGC 668 >seq35106 Length=23935 Score = 100 bits (110), Expect = 2e-16 Identities = 230/343 (67%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || ||| | ||||| ||| || || ||||| ||||| | ||||| || | || Sbjct 13162 CCTCTCAGTGATGAAGAAGCAGAATTTCCAATTGCTTACTCAGTAGTGGTTTATCACAAA 13103 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| | || || || | | |||||||||||||| | ||||| | Sbjct 13102 ATTGAGATGCTTGATAGACTTCTAAGATCAATCTATGCCCCTCAGAATTTTTACTGCATT 13043 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || ||| ||||| ||||| ||||| | || || |||| || | || || Sbjct 13042 CATGTTGATAAAAAGTCTCCAGAATCTTTCTTTGCTGCTGTGAAGGGAATAGTCTCATGT 12983 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || ||||| || || ||||| |||| | || || ||||| || ||| ||| Sbjct 12982 TTTGATAATGTATTTATTTCCAGTCAGTTAGAGAGTGTCGTATATGCTTCATGGAGCAGG 12923 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 ||||| || ||| | ||||| ||| ||||| | || |||| ||| | | ||||||| Sbjct 12922 GTGCAGGCAGACATTAACTGCATGAAAGACCT-CTACAGA-AGAAGTTCAAACTGGAAGT 12865 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 || || | || || || | ||||| || ||||||||||| Sbjct 12864 ACCTAATAAACCTCTGTGGCATGGACTTTCCTATAAAGACCAA 12822 Score = 95.1 bits (104), Expect = 8e-15 Identities = 196/288 (68%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| || ||||| || || | || ||||| || ||||| | Sbjct 12573 TTGAGTGGGCAAAAGACACTTACAGCCCAGATGAGTATCTGTGGGCAACAATTCAGAGAA 12514 Query 108334 CTCCGTGGATGCCTGGCT-CTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| || | || || | | ||| || || || |||||| |||| || || ||| Sbjct 12513 -TCCCTGAAGTCCCGGGTGCAGTTTCTTCTAGTGAC---AAGTATGACATTTCTGATATG 12458 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449 | ||| | |||||| | ||||||||||||||| || || ||||| | || || Sbjct 12457 AATGCACTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTGTCTAAAGGTGCA 12398 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 || || |||| ||| |||| | ||| | | |||| ||| |||| || ||| Sbjct 12397 CCCTACCCACCATGCAGTGGAGTTCATGTTCGTTCTGTCTGTGTTTTTGGGGTAGGAGAC 12338 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| ||||| | || | ||||| ||| |||| || || ||||||||| Sbjct 12337 CTGAACTGGGTGCTACGAAACCACCACTTCTTTGCTAATAAGTTTGAC 12290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348020041064718