Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq5826 125 6e-24 seq15821 113 4e-20 >seq5826 Length=5185 Score = 125 bits (138), Expect = 6e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| ||| |||||||| ||||||||||| ||| ||| | || ||| Sbjct 4822 ACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 4881 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | || ||| || || ||||| | || ||||||||| Sbjct 4882 AGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGG 4941 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||||||||||| ||| || |||||| Sbjct 4942 ATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 5001 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGC 45341 || ||||| |||||||| ||||| ||||| |||| Sbjct 5002 CCAGTCAGGGTCTTCACGAAGATCTGCATTTTGC 5035 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| ||| |||||||| ||||||||||| || ||| |||| ||| Sbjct 4594 ACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGCCCGTCTTCC 4653 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| ||||| || || | || ||||||||| Sbjct 4654 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGG 4713 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||||||||||| ||| || |||||| Sbjct 4714 ATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 4773 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || |||||||||||||| |||||| Sbjct 4774 CCAGTTAGGGTCTTCACAAAGATCTGCATG 4803 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| | | || ||||| || ||| ||||||||| ||||||||||| | Sbjct 4348 CCACCCCTCAGGCGCAGCACTAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4407 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || || ||||| || | || ||| || || ||||| Sbjct 4408 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGGAGGA 4467 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| || || ||| || | | | | |||| | ||| || Sbjct 4468 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACT 4527 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| ||| || |||||||| ||||| |||||||||||||| |||||| Sbjct 4528 TCCAGGGTGATTGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATG 4575 >seq15821 Length=35697 Score = 113 bits (124), Expect = 4e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| ||| || || || |||||||||||| ||| |||| | || ||||| || Sbjct 917 GTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTG 858 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| |||| || ||| || || || || | || ||||||||| || || Sbjct 857 CTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 798 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | ||||||||| | ||| || |||||||| || Sbjct 797 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGT 738 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||| |||||||||||||| |||||| Sbjct 737 CAGGGTCTTCACAAAGATCTGCATG 713 Score = 107 bits (118), Expect = 2e-18 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| ||| || || || ||||||||||| ||| |||| | || ||||| || Sbjct 461 GTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTG 402 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| || || ||| || || || || | || ||||||||| || || Sbjct 401 CTTGCCAGCGAAGTGCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 342 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | ||||||||| | ||| || |||||||| || Sbjct 341 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGT 282 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG--CCTCAATACACACAGA 45356 ||| |||||||||||||| ||||||||| | ||| ||| ||||| Sbjct 281 CAGGGTCTTCACAAAGATCTGCATGTTGAACTGCAAAACATACAGA 236 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||||| | | || | ||||| ||| |||||||| ||||||||||| Sbjct 713 GCCACCTCTCAGGCGCAGCACGAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 654 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || ||||| || || || || || || | || ||| || || || || Sbjct 653 CAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGATCAGGGGG 594 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||||||| || || ||| || | | | | |||| | |||||| Sbjct 593 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCAC 534 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || | ||| || ||||| || ||||| ||||||||||| || |||||| Sbjct 533 TTCAAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACAAAAATCTGCATG 485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394793008525747