Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq37518 120 3e-22 seq15821 107 2e-18 seq5826 91.5 1e-13 seq26687 84.2 2e-11 >seq37518 Length=11320 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| || ||| || ||||| || ||||| ||||| |||||||| ||||| || || Sbjct 9636 ACCTCATCCTTGCTGGTATACTCCACTATTTCTGTACAGAGATTGCTGCACTTGATGGTC 9577 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||| ||||| || || ||||| || || ||||||||||||||||| ||| Sbjct 9576 CCCAGGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTAGAGCATGTACGGTGTG 9517 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 ||||| || |||||| || |||||||| Sbjct 9516 CCCGTTTCCGTCTGCGATTCAATGATCGC 9488 Score = 107 bits (118), Expect = 2e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 ||||||| || |||| || ||||| || ||||| || || |||| || || | || | Sbjct 8282 TTTCAACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTAGCTC 8223 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 || ||| ||||| || |||||||| ||||| || | ||| || || | |||| ||||| Sbjct 8222 GCTGCTCTTCTTTCCCAGTGTTCTTCTTCAAGTCAAGAAATTCAAAGATGTCCAAATGCC 8163 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 ||||||| || || | |||||| || || ||||||| || Sbjct 8162 ACGGCTCCAGATAGATGGCAAAAGCCCCAGGTCTCTGAT 8124 >seq15821 Length=35697 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| |||| || || || Sbjct 713 CATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 772 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||||||||||||| | || || || || Sbjct 773 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 832 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||||||||| ||| ||||||| | || || ||| || || Sbjct 833 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 892 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| ||||||||||| || || || || || || | ||| |||| ||| Sbjct 893 CATCCAAAAAGAATCCACCCTGCACCTTGTCCTGCGCCTGCGGGGTGGT 941 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || ||||| ||||| ||||| || |||||| |||| || || || Sbjct 255 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCC 314 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | || | || || | || ||||||||||||| | || || || Sbjct 315 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGAT 374 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || ||||||||||| ||| ||||||| | || || || || Sbjct 375 CAGCAGAGGCTGCACTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTAC 434 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| ||||||||||| || || || || || || | |||||||| || Sbjct 435 AACATCCAAAAAGAATCCACCCTGCACCTTGTCCTGCGCCTGAGGGGGGG 484 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| || ||||| ||||| || || || |||||| | || || || || Sbjct 485 CATGCAGATTTTTGTGAAGACCCTGACTGGGAAGACCATCACCCTTGAAGTGGAGCCCAG 544 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||||||||||||| | || || || || Sbjct 545 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 604 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| ||||||| ||| || || || || Sbjct 605 GCAGAGGCTTATTTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTGTCTGACTACAA 664 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || ||||| || || ||||| || || | ||||| || || Sbjct 665 CATCCAGAAGGAATCCACCCTGCATCTCGTGCTGCGCCTGAGAGGTGG 712 >seq5826 Length=5185 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 4575 CATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACAATCACCCTGGAAGTTGAGCCCAG 4516 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || ||||||||||||| | || || || || Sbjct 4515 TGACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCA 4456 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||||||||| ||| ||||||| || || || || || Sbjct 4455 GCAGAGGCTCATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 4396 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || || || | || || | |||||||| |||| Sbjct 4395 CATCCAGAAGGAGTCCACCCTCCACTTAGTGCTGCGCCTGAGGGGTGGTA 4346 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 5033 AAAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 4974 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | || | ||||| | || ||||||||||||| | || || || Sbjct 4973 AGTGACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCTCCAGAT 4914 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| | || || ||||||||||| ||| ||||||| Sbjct 4913 CAGCAGAGGCTCATCTTCGCTGGCAAGCAGCTGGAAGA 4876 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| || || ||||| || |||||| | || || || || Sbjct 4803 CATGCAGATCTTTGTGAAGACCCTAACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 4744 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || ||||||||||||| | || || ||||| Sbjct 4743 TGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCA 4684 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| |||||||| || || || || || Sbjct 4683 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCTTGTCTGACTACAA 4624 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || ||||| || || || |||| || Sbjct 4623 CATCCAGAAGGAATCCACCCTGCACTTGGTGCT 4591 >seq26687 Length=16082 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 22697 CCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCG 22756 || || |||||||||||||| || | | ||||||||| ||||| || ||||| || Sbjct 700 CCCTCATACGTTTCGTACGGCCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCA 641 Query 22757 CCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTAC 22816 || ||||| || ||||| || |||| || |||||| ||| | |||||| | Sbjct 640 CCATAATAAATGGTCTCAAAAATTTGCTGGTTCAAGCGCTGGGCCTCAGGGCTTTCAAAG 581 Query 22817 GGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCG 22875 || ||||||| | ||| || || |||| |||||| ||||| || || || || || Sbjct 580 GGGTACCGCATCAAGATGAAAGCATCTGCCAGACCCTGCACGCCGATGCCAATGGGCCG 522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445439837107440