Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq13427 132 6e-26 seq40891 123 3e-23 >seq13427 Length=23672 Score = 132 bits (146), Expect = 6e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 10552 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 10493 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||||| ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 10492 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 10433 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | |||||| || Sbjct 10432 CAACCACTCTCTCACC 10417 >seq40891 Length=31075 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | |||||| ||||| |||||||| ||||||| || | ||| | Sbjct 3161 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTCTTCT 3102 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 3101 TCAGCCAAAAAATTGATGCAAAAGAACCAGAAAAGAATATTCCTTCCACTGCTGCAAAAG 3042 Query 42207 C 42207 | Sbjct 3041 C 3041 Score = 93.3 bits (102), Expect = 6e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| || || || || | |||||| |||||||||||||| |||||||| ||||| Sbjct 1073 ATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGC 1014 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 ||||| || || |||||||| | || || || | ||||||||| Sbjct 1013 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTCT 968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670647531811320