Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq15821 86.0 6e-12 seq37518 84.2 2e-11 seq5826 82.4 8e-11 >seq15821 Length=35697 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||||||||| |||||||| ||| || |||| ||||| || || || ||| Sbjct 910 GTGGATTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTGCCA 851 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || ||||||| | |||||||| || || |||||||| ||||| || || || Sbjct 850 GCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 791 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| |||| || || || | || | ||||||||||||| || Sbjct 790 ACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 731 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 730 TTCACAAAGATCTGCAT 714 >seq37518 Length=11320 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 157106 ACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTT-TGATTGCTTTT 157164 |||||||| | ||| | ||||||||| || || ||| || | || |||||||| || Sbjct 9612 ACTATTTCTGTACAGAGATTGCTGCACTTGATGG-TCCCCAGGTTCTGCTGATTGCTCTT 9554 Query 157165 GCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTAT 157224 |||||||||| ||| ||||| | ||||||||||||||| ||||| | || ||| || Sbjct 9553 CCGGTTGCAAGAGTCTTTGTAGAGCATGTACGGTGTGCCCGTTTCCGTCTGCGATTCAAT 9494 Query 157225 GAT 157227 ||| Sbjct 9493 GAT 9491 >seq5826 Length=5185 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| ||||| || | || || || || || |||||||| || || |||| | Sbjct 4360 CGCAGCACTAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 4419 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || || || ||||| |||| || | |||||||| ||||| |||||||| ||| Sbjct 4420 TCTTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTG 4479 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || || | | || | ||||| |||| || ||||| | || | Sbjct 4480 TCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATT 4539 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||||||||| || || || || || ||||| Sbjct 4540 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506642967588240