Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq33652 159 5e-34 seq28363 109 8e-19 >seq33652 Length=99775 Score = 159 bits (176), Expect = 5e-34 Identities = 214/298 (72%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| |||||| | |||| || ||| | | ||| Sbjct 94478 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 94537 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| ||||| | ||| || |||||||| ||||||||||| | |||| Sbjct 94538 TATTGATTATTTCAAAGCCCACTTTTCCACCAAAGGTGCTAGGTTTCCAGTACTCGGGGG 94597 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || |||| || ||||| || || ||||| || || | ||| | || Sbjct 94598 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCACCAATCTCCACCATTG 94657 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | ||||| |||||||| || || |||||||| || | || || | |||| ||||| Sbjct 94658 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTACAAGGAGGCCTGGATACAGCTCCA 94717 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 ||| || |||||||| ||||| | ||||| || || ||||| ||||||||||| Sbjct 94718 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGT 94775 Score = 134 bits (148), Expect = 2e-26 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| ||| ||||| || || || || ||| ||| || ||||| || ||||||| Sbjct 96521 ATGAGTCTAGTAGTCTGGAAGAGCTGCTCATCATCCCACTCAGGATGCTCCTGTTTCAGG 96580 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||||||||| ||||| || ||||| |||||||| | || || Sbjct 96581 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCCGGG 96640 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || ||||||| | ||| | ||| || | | ||||| Sbjct 96641 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 96700 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || |||| || ||||||||||| || ||||| ||| Sbjct 96701 TAGATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCATCAATCATC 96760 Query 9862 TG 9863 || Sbjct 96761 TG 96762 >seq28363 Length=16454 Score = 109 bits (120), Expect = 8e-19 Identities = 192/280 (69%), Gaps = 11/280 (4%) Strand=Plus/Minus Query 8672 GGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATA 8731 || || |||||||| | |||| ||| || || ||| || || || || || Sbjct 6805 GGCACACGGAACGCCACGTACGGGCACTTCTTCACATTGAGGCACACGAGTTTCTCGAGC 6746 Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791 | ||| |||| || ||| |||| || ||||||| |||||||||||||||||||| Sbjct 6745 GATGCCGTCTTCACTATCTCAAAGCCAGTCGCTCCGCCAAAGGTGCTGGGTTTCCAGTAC 6686 Query 8792 CCCGGGGAGCAGATGACGTTC-------GCC----ATGAGGCCTTTGAGGGAAAACGGAG 8840 |||||||||||||| |||| ||| | || || || ||||| ||||||| Sbjct 6685 TCCGGGGAGCAGATGGGGTTCCCGAGCAGCCCCGGAGCAGCCCCTTCAGGGAGAACGGAG 6626 Query 8841 CCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGA 8900 | || | ||| | ||||| || || || || | ||||| ||||||| || | || | Sbjct 6625 CTCCGATCTCTACCATGCTTTCTCCAAAAATCCCATTGGGTTGGGGCTTCTCGAGCAGCA 6566 Query 8901 ATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 | || || ||||||| || ||||||||||| || || Sbjct 6565 AGCCCAGATAAAACTCCAGCGCATCGATGTCTCCATACAG 6526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708005743588080