Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09]
58,607 sequences; 1,069,324,295 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq15821 127 2e-24
>seq15821
Length=35697
Score = 127 bits (140), Expect = 2e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| ||||||| || ||||||| |||| |||||| | |
Sbjct 714 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 773
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || ||| ||||| || ||| ||||| ||||| ||||| ||||| ||
Sbjct 774 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 833
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || || || ||||| || | ||||||| |||||| || ||| |||||
Sbjct 834 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 893
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
|| |||||||||||||| || ||
Sbjct 894 ATCCAAAAAGAATCCACCCTGCA 916
Score = 109 bits (120), Expect = 5e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| |||| || || ||||||| |||| |||||| | |
Sbjct 258 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 317
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || ||| ||||| || ||| ||||| ||||| ||||| ||||| ||
Sbjct 318 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 377
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || || ||||| || | ||||||| |||||| || || |||||
Sbjct 378 CAGAGGCTGCACTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 437
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
|| |||||||||||||| || ||
Sbjct 438 ATCCAAAAAGAATCCACCCTGCA 460
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433018485590705
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |