Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq15821 118 9e-22 >seq15821 Length=35697 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | || || || || |||| ||||||||||| ||| Sbjct 486 ATGCAGATTTTTGTGAAGACCCTGACTGGGAAGACCATCACCCTTGAAGTGGAGCCCAGT 545 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || |||||||| || ||||| || ||||| Sbjct 546 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 605 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||| ||||| ||| | || ||| |||||| | || || |||||| Sbjct 606 CAGAGGCTTATTTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTGTCTGACTACAAC 665 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || ||||||||| | ||| | || |||| Sbjct 666 ATCCAGAAGGAATCCACCCTGCATCTCGTGCTGCG 700 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || || |||| || || ||||| ||| Sbjct 714 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 773 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || |||||||| || ||||| || ||||| Sbjct 774 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 833 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || ||||| ||| | || ||| |||||| | ||||| |||||| Sbjct 834 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 893 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 || ||||||||||||||| | || | || |||| |||| || |||| Sbjct 894 ATCCAAAAAGAATCCACCCTGCACCTTGTCCTGCGCCTGCGGGGTGGTT 942 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || || | || || || || |||| || || ||||| || Sbjct 255 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCC 314 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || | || || || || |||||||| || ||||| || ||| Sbjct 315 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGAT 374 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || || ||||| ||| | || ||| |||||| | || || ||| Sbjct 375 CAGCAGAGGCTGCACTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTAC 434 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| ||||||||||||||| Sbjct 435 AACATCCAAAAAGAATCCACC 455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419428199700955