Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq5826 183 6e-41 seq15821 167 4e-36 seq40891 84.2 4e-11 >seq5826 Length=5185 Score = 183 bits (202), Expect = 6e-41 Identities = 175/224 (78%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||||||| || ||||| || || |||||||| || || || || || | | Sbjct 4813 AGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 4872 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || ||||| ||||| || || || || || |||||||||||| Sbjct 4873 CCATCTTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGGAGGAATGCCTTCC 4932 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| |||||||| ||| |||||||| | || || |||| |||| Sbjct 4933 TTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTG 4992 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCT 68467 ||||| || || || |||||||| ||||| ||||||||| |||| Sbjct 4993 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTGCT 5036 Score = 178 bits (196), Expect = 2e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || ||||| || |||||||| || |||||||| || || || || || | | Sbjct 4357 AGGCGCAGCACTAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 4416 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || ||||| ||||| || || || || || |||||||||||| Sbjct 4417 CCATCTTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGGAGGAATGCCTTCC 4476 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| |||||||| ||| |||||||| | || ||||||| |||| Sbjct 4477 TTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTG 4536 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || || |||||||| || || |||||||| Sbjct 4537 ATTGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4574 Score = 163 bits (180), Expect = 5e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||||||| || ||||| || || |||||||| || || || | || | | Sbjct 4585 AGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGC 4644 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | |||||| || || || || || || || ||||| || |||||||||||| Sbjct 4645 CCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCC 4704 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||||||| ||| |||||||| | || || |||| |||| Sbjct 4705 TTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTG 4764 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| || || |||||||| Sbjct 4765 ATGGTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCAT 4802 >seq15821 Length=35697 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| || | ||| || ||||| |||||||||||||| || ||||| Sbjct 940 CCACCCCGCAGGCGCAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCGGAC 881 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| || || || || || || || ||| Sbjct 880 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGA 821 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| ||||| || ||| |||||||| | || || Sbjct 820 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 761 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || |||||||| || || |||||||| Sbjct 760 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 714 Score = 150 bits (166), Expect = 3e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | ||| || ||||| |||||||||||||| || || || || || | Sbjct 475 AGGCGCAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGA 416 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || ||||| || || || || || || |||||||||||| Sbjct 415 CCATCTTCCAGCTGCTTGCCAGCGAAGTGCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 356 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| || ||| |||||||| | || || || | |||| Sbjct 355 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTG 296 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| || || |||||||| Sbjct 295 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 258 Score = 145 bits (160), Expect = 1e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | || || ||||| || || |||||||| || || || || || | Sbjct 703 AGGCGCAGCACGAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGG 644 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || || || || |||||||||||| Sbjct 643 CCATCTTCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGATCAGGGGGAATGCCTTCC 584 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| || ||| |||||||| | || ||||| | |||| Sbjct 583 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTG 524 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| || || |||||||| Sbjct 523 ATGGTCTTCCCAGTCAGGGTCTTCACAAAAATCTGCAT 486 >seq40891 Length=31075 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 10740 ACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGG 10799 ||||||||| | |||||||| | ||| ||||||||||||||||||| | |||||| || Sbjct 159 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 100 Query 10800 TACCGGATGGGGAA 10813 ||| |||||||||| Sbjct 99 TACTGGATGGGGAA 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920947230950040