Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5826 131 2e-25 seq15821 125 7e-24 >seq5826 Length=5185 Score = 131 bits (144), Expect = 2e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | | ||||||| | ||||| ||||||||||| Sbjct 4834 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 4893 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||||| |||||| || |||||||| ||||| || || || || || ||| Sbjct 4894 GCGAAGATGAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTG 4953 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | || | ||||||||| |||| || Sbjct 4954 ACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 5013 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || |||||||| Sbjct 5014 TTCACGAAGATCTGCATTTT 5033 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||||| || | || || || || || |||||||| || | | ||||||| | ||| Sbjct 4363 AGCACTAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 4422 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | ||||||| |||||| || |||||||| ||||| || || Sbjct 4423 TCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCC 4482 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || ||||| | || | ||| Sbjct 4483 TGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATTGTC 4542 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| || || || || || ||||| Sbjct 4543 TTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4574 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | | ||||||| ||||||| ||||||||||| Sbjct 4606 GTGGATTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGCCCGTCTTCCAGCTGCTTGCCA 4665 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || ||||| ||||| || || || || || ||| Sbjct 4666 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 4725 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || ||||| || | || | ||||||||| || | || Sbjct 4726 ACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTTAGGGTC 4785 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 4786 TTCACAAAGATCTGCAT 4802 >seq15821 Length=35697 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || ||||| || || |||||||| || | | ||||| | ||| Sbjct 697 AGCACGAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCT 638 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| |||| |||| |||||| || || ||||| ||||| || || Sbjct 637 TCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 578 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || |||||||| | || | |||| Sbjct 577 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTC 518 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || |||| || || || ||||| ||||| Sbjct 517 TTCCCAGTCAGGGTCTTCACAAAAATCTGCAT 486 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || || || | || ||||||||||| |||||||| || | Sbjct 941 ACCACCCCGCAGGCGCAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCGGA 882 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | ||||| ||||||||||| || | || |||| |||||| || || || Sbjct 881 CAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGG 822 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || || || ||| ||| ||| | || |||| || ||||| Sbjct 821 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCAC 762 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||||| || || || || || ||||| Sbjct 761 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 714 Score = 113 bits (124), Expect = 5e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||| |||||||| || | | |||||| | ||||| ||||||||||| Sbjct 454 GTGGATTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCA 395 Query 64307 GCATAAATG-AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365 || || || |||| |||||| || || ||||| ||||| || || || || || ||| Sbjct 394 GC-GAAGTGCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 336 Query 64366 TACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | || |||| || ||||| || | || | ||||||||| |||| || Sbjct 335 CACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 276 Query 64426 TTTTACGAAAATTTGCATTTT 64446 || || || || ||||| || Sbjct 275 CTTCACAAAGATCTGCATGTT 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499278766465080