Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq33652 138 2e-27 seq28363 104 3e-17 >seq33652 Length=99775 Score = 138 bits (152), Expect = 2e-27 Identities = 219/314 (70%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 8862 GTTCCGCGTTGGAAACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGA 8921 |||| | ||| | || |||| || | || ||||| || ||||| ||| || |||| Sbjct 94460 GTTCGGGGTTTAAGACGTGGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGA 94519 Query 8922 GGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGG 8981 | ||| | || || || || | || || || || || | || || |||||||| | Sbjct 94520 GCTTCTGTAAGGAGGCAGTATTGATTATTTCAAAGCCCACTTTTCCACCAAAGGTGCTAG 94579 Query 8982 GTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAG 9041 ||||||||||| | ||||||||||| | || |||| || ||||||| || ||||| | Sbjct 94580 GTTTCCAGTACTCGGGGGAGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTG 94639 Query 9042 CCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGA 9101 | || | ||| | || | ||||| ||||||||||| || || || ||||| || | || Sbjct 94640 CACCAATCTCCACCATTGTTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTACAAGGA 94699 Query 9102 AGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTA 9161 ||| | || || || | ||| || | ||| ||||| || |||||| || || || | Sbjct 94700 GGCCTGGATACAGCTCCATAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCA 94759 Query 9162 TCTCCTTCTCACCT 9175 | || || || ||| Sbjct 94760 TTTCTTTTTCTCCT 94773 Score = 134 bits (148), Expect = 2e-26 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||| || || || | |||||| ||| |||| || || || || ||||| || Sbjct 96521 ATGAGTCTAGTAGTCTGGAAGAGCTGCTCATCATCCCACTCAGGATGCTCCTGTTTCAGG 96580 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||||| ||||||||| ||||||||||| || || |||||||| || ||||| Sbjct 96581 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCCGGG 96640 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||||||||| || | ||| || | ||| ||| | || || | | || | Sbjct 96641 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 96700 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || || || ||||||||||| || ||||| | | Sbjct 96701 TAGATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCATCAATCATC 96760 Query 9967 TG 9968 || Sbjct 96761 TG 96762 Score = 102 bits (112), Expect = 1e-16 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 || || |||||||| | ||| || | | || |||| | |||| ||| | ||| Sbjct 95303 ATAGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCGTGTATCTGGAAAGTG 95362 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | |||||| ||||||| |||||||| ||||| || |||||||||||| Sbjct 95363 TCAGGCAGAAGCGGGTGCCAGTGGTAGAGAGTATTGAATTCGGCTGCAATTCGGTTCTGG 95422 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| || ||||| | || | |||||| || | Sbjct 95423 TATTGAAATCGCTGGT--TGAACAGCAGCTCAGGATCAAACTTGAGTTTGAAGTGATAGC 95480 Query 9671 CGCTGAGTTGCTGGACATA 9689 |||| | ||||| || || Sbjct 95481 CGCTCAAGTGCTGCACGTA 95499 >seq28363 Length=16454 Score = 104 bits (114), Expect = 3e-17 Identities = 211/314 (67%), Gaps = 11/314 (4%) Strand=Plus/Minus Query 8876 ACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTT 8935 || |||||||| | |||| || |||||||||| || | ||| || | | | Sbjct 6802 ACACGGAACGCCACGTACGGGCACTTCTTCACATTGAGGCACACGAGTTTCTCGAGCGAT 6743 Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || ||||| || || || || | ||||| ||||||||||||||||||||| || Sbjct 6742 GCCGTCTTCACTATCTCAAAGCCAGTCGCTCCGCCAAAGGTGCTGGGTTTCCAGTACTCC 6683 Query 8996 GGGGAGCAGATGACGTTC-------GCC----ATGAGCCCTTTCAAGGAAAACGGAGCCC 9044 |||||||||||| |||| ||| | ||||| |||| ||| |||||||| | Sbjct 6682 GGGGAGCAGATGGGGTTCCCGAGCAGCCCCGGAGCAGCCCCTTCAGGGAGAACGGAGCTC 6623 Query 9045 CCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGC 9104 | | ||| | ||||| || || || || || ||| | || || |||| | |||| Sbjct 6622 CGATCTCTACCATGCTTTCTCCAAAAATCCCATTGGGTTGGGGCTTCTCGAGCAGCAAGC 6563 Query 9105 CAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCT 9164 | || | || | || |||| ||| ||||| || | |||| ||| || || ||| Sbjct 6562 CCAGATAAAACTCCAGCGCATCGATGTCTCCATACAGCTCCTCCAGCTCTGCCGCCTTCT 6503 Query 9165 CCTTCTCACCTACA 9178 | | ||| ||| || Sbjct 6502 CTTCCTCTCCTGCA 6489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723197805913800