Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq46232 113 2e-19 seq39577 87.8 7e-12 >seq46232 Length=24660 Score = 113 bits (124), Expect = 2e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| |||| ||| | ||||| || || |||||||||||| | || || || || || Sbjct 23710 GTTACTAATGCGGTAGTAACTGTACCAGCCTATTTCAATGATTCTCAGCGTCAGGCTACA 23651 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| |||||| || | |||||||| |||||||| || || || ||||| Sbjct 23650 AAAGATGCTGGAACTATTGCAGGGCTCAATGTTCTGCGAATTATCAACGAGCCAACAGCT 23591 Query 451433 GCTGCTCTAGCATATGGACT 451452 ||||| |||| ||||| || Sbjct 23590 GCTGCGATAGCCTATGGTCT 23571 >seq39577 Length=5739 Score = 87.8 bits (96), Expect = 7e-12 Identities = 84/107 (79%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 451190 AAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTCCT 451246 |||| |||||| |||||||||| || | ||||| | || ||||| ||||||||| Sbjct 5138 AAAGCCAAGCCCCATATTCAAGTTGATGTTGGAGGTGGACAGACAAAAACGTTTGCTCCT 5079 Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 ||||||||||| ||||||| || || || ||||| ||||| ||||| Sbjct 5078 GAAGAAATTTCTGCTATGGTCCTGACAAAGATGAAGGAAACGGCAGA 5032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974234828731556