Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq30356 288 1e-72 seq46232 178 2e-39 seq39577 89.7 7e-13 >seq30356 Length=2418 Score = 288 bits (318), Expect = 1e-72 Identities = 1034/1599 (65%), Gaps = 36/1599 (2%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 ||||||||| |||| || || || || ||||| ||||| |||||||| || || Sbjct 1692 TTCATCTTCTGCTTTGTATTTCTCTGCTTCTTGCACCATACGGTCAATGTCATCCTTGCT 1633 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | | ||||| ||||| || || || ||||| | ||||||| | ||| || | Sbjct 1632 CAGGCGACCCTTGTCATTGGTGATGGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCAC 1573 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 ||||| || |||| |||||||| ||||| | ||||| | || | || || || Sbjct 1572 CGCACTGACGTTCAGGATACCATTGGCATCGATGTCGAAAGTGACCTCGATCTGGGGGAC 1513 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 || | ||||| | || || ||||||| ||||| | || || || |||| || | Sbjct 1512 TCCACGGGGTGCTGGGGGGATGCCCGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCTTT 1453 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTTGT 6865 || | | | ||||| || || || | | | ||| || || || || Sbjct 1452 CGTCATAGCCCTCTCACCCTCGTACACCTGGACCAGGACACTGCTC--TGGTTGTCCGAG 1395 Query 6866 GCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGG 6925 || | |||| | || || || | ||||| || || || | | || | | Sbjct 1394 TAGGTGGTGAAGGTCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGCA 1335 Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | ||||| || || | || || |||||||| || || ||||| || | | Sbjct 1334 GTCATCACTCCACCAGCTGTCTCAATGCCCAGGGACAGAGGGGTGACATCCAACAGGAGC 1275 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || || || ||| || | || ||| | | ||| || ||||| || | || || Sbjct 1274 AGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCACCA 1215 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || |||||||||||||| || | || || |||||||| || || || | ||| Sbjct 1214 TAAGCAACAGCCTCATCGGGGTTGATGCTCTTGTTGAGTTCTTTGCCATTGAAGAAGTCC 1155 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || || | ||| || || ||||| || || || ||||| |||| ||||| || | Sbjct 1154 TGTAGCAGCTTTTGGATCTTGGGGATACGGGTAGAGCCACCCACCAGCACGATCTCCTGG 1095 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 | | || || | ||| | || || || | || || || || |||| | Sbjct 1094 ATCTGGCCCTTGTCTAGCTTGGCATCACGCAGGGCCTTCTCCACGGGCTCCAAGGTGCCA 1035 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | || | || |||||||| || ||||| |||||||| || ||||| ||| Sbjct 1034 CGGAAGAGATCAGCATTGAGCTCCTCAAAGCGGGCACGAGTAATGGAGGTGTAGAAGTCA 975 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA---TAACGTT 7342 | ||| ||||| | || ||||| |||||| | | |||| || ||||| | || Sbjct 974 ATGCCCTCGTAGAGAGAGTCAATCTCAATGCTAGCTTGT---GTGGAAGAGCTCAGAGTG 918 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 |||||||| | |||||| |||||||| | || | | || ||| ||| || | ||| Sbjct 917 CGCTTTGCTCTCTCACAAGCCGTTCGCAGTCGCCTCACTGCTCGCTTGTTGCCAGCAATG 858 Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTT-CAGAGAAGTGTCGA--AGGAGTCTCGAATCG 7459 || ||| || ||||| || || |||| || | || || | | | | | || Sbjct 857 TCACGCTTGTGCTTACGCTTGAATTCTTCCACAAAATGGTTCACCATGCGGTT---GTCA 801 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || ||||||| || || || || || || | || || |||||||| || | Sbjct 800 AAGTCCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATGCCATCC 741 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 |||||| | | | || |||||||| || || || |||| |||||| ||||| |||||| Sbjct 740 TCAATGGTAAGGATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACGTTC 681 Query 7580 GTATCGTCGTCTTTG------TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | || | | | ||||| || | || || || ||||| || || || || Sbjct 680 TTCTCTCCAGCCCGGGTACCTTTCTTGTCCAAGCCATAGGCTATAGCAGCAGCTGTGGGC 621 Query 7634 TCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 || || |||||||| | ||| || ||||||| || || | |||||||| || || || Sbjct 620 TCGTTGATAATACGCATCACA-TTAAGGCCAGTGATGGTACCAGCATCTTTGGTGGCCTG 562 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || || || || || ||||| || || || || | ||| || | | ||||| || Sbjct 561 GCGCTGGGAGTCATTGAAGTAAGCAGGCACTGTGATGACGGCATTCTGCACTTTGCGCCC 502 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812 ||||| | || || || || ||||| |||||||| ||||| || ||||| || | Sbjct 501 CAGATAGGCCTCAGCAATCTCCTTCATCTTGGTAAGGACCATGGAGCTGATCTCCTCTG- 443 Query 7813 CGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC 7871 | | | || ||| | ||||| || | || || | | | |||| || || | Sbjct 442 GGAAGAAGGTCTTCATCTCACCCTTGTACTCCACCTGCACCTTGGGCTT---GCCACCCT 386 Query 7872 CGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGT-TGGTCCGAAAAC 7930 || | ||| | | ||| | ||||| || | || | |||| |||| || Sbjct 385 CGTTCACCACCCGGAAGGGCCAGTGCTTCATGTCAGCCTGCA-CTGTGGGGTCATCGTAC 327 Query 7931 TTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGG 7990 || | ||||| |||||||| ||||| || | ||||| | || ||||| || ||| Sbjct 326 TTGCGGCCGATGAGACGCTTGGCATCGAAGATGGTGTTGGTCGGATTCATAGCCACCTGG 267 Query 7991 TTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG 8050 ||||| || || |||||||| || || || | || || || || || || | |||| Sbjct 266 TTCTTGGCAGCATCCCCGATGAGCCGCTC---CGTGTCGGTGAAGGCCACATA-GCTGGG 211 Query 8051 -GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCC 8109 || || || || || |||||||| || || || || || | | | || |||| || Sbjct 210 CGTGGTGCGGTTGCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAGACACC 151 Query 8110 GACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 ||||| || ||||| || || | || || ||||| || Sbjct 150 CACGCAGGAGTACGTGGTGCCCAGGTCGATGCCGATCGC 112 >seq46232 Length=24660 Score = 178 bits (196), Expect = 2e-39 Identities = 367/543 (68%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || || ||||| || || || | || ||||| ||||| || || || Sbjct 22913 GCACCGTAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 22972 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || || ||||| || ||||| || || || ||||| |||| ||||| Sbjct 22973 AAGTCCTGCAGCAGTTTCTGAATCTTTGGGATGCGAGTAGACCCACCAACCAGCACGATG 23032 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | |||||| || | || | || || || | ||||| || || |||| Sbjct 23033 TCATGGATCTGCGATTTGTCTAGTTTGGCATCCCGCAGGGCCTTTTCCACCGGATCCAGG 23092 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 ||||| | ||| | ||| || || || || || | |||||||||||| ||| Sbjct 23093 GTGCCGCGGAAGAGGTCAGCATTCAGCTCTTCGAAGCGAGCTCTGGTAATGGATGTGTAG 23152 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| || || || | |||||||||||||| | | || | | || || | Sbjct 23153 AAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTGGATGACAGA 23212 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| ||||| || || || || | ||||||| || | | ||| | Sbjct 23213 GTACGCTTTGCACGCTCGCATGCAGTGCGGAGGCGACGAACTGCTCTCTTGTTCTCACTG 23272 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAA 7456 || |||||||| || || || || || || || |||||| | || | | | | Sbjct 23273 ATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATGCGGTTG--- 23329 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||| ||||||||||| || || || || || | ||| || |||||||| || Sbjct 23330 TCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATGCCA 23389 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | || | || |||||||| || ||||| || ||||| || || || || Sbjct 23390 TCTTCAATAGTCAAAATTGACACATCAAAGGTGCCACCTCCAAGGTCGAAGATAAGAACA 23449 Query 7577 TTC 7579 ||| Sbjct 23450 TTC 23452 >seq39577 Length=5739 Score = 89.7 bits (98), Expect = 7e-13 Identities = 129/181 (71%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT---TGGTTC 7993 ||||| || ||||| |||||||| || ||||| | |||||| || ||| |||||| Sbjct 5523 CCGATGAGCCGCTTGGCATCAAACACGGTGTTCTCGGGGTT---GGATGTAAGCTGGTTC 5579 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053 || || || |||||||| | || || | ||| || || ||||| || || || Sbjct 5580 TTAGCGGCATCCCCGATCAAGCGCTCCCCCTCGGGCGTGAAAGCCACGTAGGACGGCGTG 5639 Query 8054 GTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACG 8113 | || || || ||||||||||| || ||||| |||||| |||| | | ||||| ||| Sbjct 5640 ATGCGGTTACCCTGGTCGTTCGCGATGATTTCCACGCGGCCGTTCTTGAAAACGCCCACG 5699 Query 8114 C 8114 | Sbjct 5700 C 5700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634667509649880