Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5826 107 1e-18 seq15821 96.9 2e-15 >seq5826 Length=5185 Score = 107 bits (118), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 || || ||||||| | || || ||||| | ||| || ||||| ||||| ||||| Sbjct 4345 TTACCACCCCTCAGGCGCAGCACTAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 4404 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || ||| | || |||| |||||||| || || || || || || | ||||| ||| | Sbjct 4405 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGGA 4464 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCT 34929 || | || |||||||| ||||| ||||| || || || | |||| || || Sbjct 4465 GGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGAC--ATTCTCAATGGTGTCACTGGGCT 4522 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || | ||| || || || || || || |||||||||||||||||||| Sbjct 4523 CAACTTCCAGGGTGATTGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4574 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||| ||||| ||||| ||||| || | | | || | || ||| Sbjct 4594 ACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGCCCGTCTTCC 4653 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | |||||||| | || | || |||||||| Sbjct 4654 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGG 4713 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 4714 ATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 4773 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||||||||||||||| Sbjct 4774 CCAGTTAGGGTCTTCACAAAGATCTGCAT 4802 Score = 105 bits (116), Expect = 4e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||| ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 4822 ACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 4881 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || | ||||| ||| | || | || |||||||| Sbjct 4882 AGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGG 4941 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 4942 ATCTTAGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCT 4999 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || || || |||||||| ||||||||||| || Sbjct 5000 TGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 5033 >seq15821 Length=35697 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| || ||||| ||||| || ||| | || |||| |||||||| || || || || Sbjct 905 TTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAA 846 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| || | || | || |||||||| ||||| || || | Sbjct 845 GATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--A 788 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || ||| || |||| ||| ||||| || || || || |||||| Sbjct 787 TTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 728 Query 34968 ACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 727 ACAAAGATCTGCAT 714 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | || || | ||| | ||| |||||| || ||||| ||||| || Sbjct 484 CCCCCCCTCAGGCGCAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAC 425 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || || || || | ||||| || | || Sbjct 424 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGTGCAGCCTCTGCTGATCAGGGGGA 365 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || |||||||| ||||| || || || || || | |||| || ||| | Sbjct 364 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCACTGGGCTCCA 307 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | |||| ||| ||||| || || || || |||||||||||||||||||| || Sbjct 306 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 255 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || || | || |||| |||||||| || || ||||| Sbjct 677 TTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 618 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| || | || | || |||||||| ||||| || || | Sbjct 617 AATAAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--A 560 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || ||| || || | ||| ||||| || || || || |||||| Sbjct 559 TTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTCTTCCCAGTCAGGGTCTTC 500 Query 34968 ACAAAGATCTGCAT 34981 ||||| |||||||| Sbjct 499 ACAAAAATCTGCAT 486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324401723045496