Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq40891 123 3e-23 seq13427 105 8e-18 >seq40891 Length=31075 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | ||| |||||||| || | |||||||| | |||||| || | Sbjct 3161 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTCTTCT 3102 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || || ||||| || |||||||||||||| ||||| ||||||||||||| Sbjct 3101 TCAGCCAAAAAATTGATGCAAAAGAACCAGAAAAGAATATTCCTTCCACTGCTGCAAAAG 3042 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 3041 CTACTACGCGTTCTCC 3026 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||||| || | || || | | |||||||||||||||||| || ||||| || || Sbjct 1073 ATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGC 1014 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || || || ||||| | |||||||| || |||||||| Sbjct 1013 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 969 >seq13427 Length=23672 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || || || | ||||||||||| || || || | Sbjct 10552 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 10493 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||||| |||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 10492 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 10433 Query 19103 CAACTAGTCTTTCTCC 19118 |||| | ||| || || Sbjct 10432 CAACCACTCTCTCACC 10417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561697006119480