Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq46232 134 1e-25 seq15821 96.9 3e-14 seq30356 87.8 1e-11 >seq46232 Length=24660 Score = 134 bits (148), Expect = 1e-25 Identities = 118/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| ||| ||||||||||||| ||||| ||||| || || ||||| ||||| Sbjct 23710 GTTACTAATGCGGTAGTAACTGTACCAGCCTATTTCAATGATTCTCAGCGTCAGGCTACA 23651 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| |||||| || || |||||||| || |||||||| || || || ||| Sbjct 23650 AAAGATGCTGGAACTATTGCAGGGCTCAATGTTCTGCGAATTATCAACGAGCCAACAGCT 23591 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| | || ||||| || || ||| Sbjct 23590 GCTGCGATAGCCTATGGTCTGGACAAA 23564 >seq15821 Length=35697 Score = 96.9 bits (106), Expect = 3e-14 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || || || || || ||||| ||||| ||| || || ||||| |||| ||||| Sbjct 706 CTCAGGCGCAGCACGAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTG 647 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | |||||| || || || || ||||||||||| || ||||||||||| ||||| ||| Sbjct 646 CGGCCATCTTCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGATCAGGGGGAATGCCT 587 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 || || || || || || || || |||||| || ||| || | | || ||| || Sbjct 586 TCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTG-GGCTCCACTTCAAG 528 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || ||||| || || || || ||||| ||||| Sbjct 527 GGTGATGGTCTTCCCAGTCAGGGTCTTCACAAAAATCTGCAT 486 >seq30356 Length=2418 Score = 87.8 bits (96), Expect = 1e-11 Identities = 101/135 (75%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || || || || || || || |||||||| || || || || || ||||||| Sbjct 518 ATGCCGTCATCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATG 577 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| |||||||| | ||||||||||| || || || |||||||| Sbjct 578 CTGGTACCATCACTGGCCTTAATGTGATGCGTATTATCAACGAGCCCACAGCTGCTGCTA 637 Query 550518 TTGCATATGGACTTG 550532 | || ||||| |||| Sbjct 638 TAGCCTATGG-CTTG 651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026196597522430