Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq46232 125 5e-23 seq15821 105 4e-17 seq5826 91.5 1e-12 >seq46232 Length=24660 Score = 125 bits (138), Expect = 5e-23 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| |||| ||| | ||||| ||||| ||||| ||||||||||| ||||| || || Sbjct 23710 GTTACTAATGCGGTAGTAACTGTACCAGCCTATTTCAATGATTCTCAGCGTCAGGCTACA 23651 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| |||| |||||||| || |||||| | || ||||| || || |||||||| Sbjct 23650 AAAGATGCTGGAACTATTGCAGGGCTCAATGTTCTGCGAATTATCAACGAGCCAACAGCT 23591 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || | || |||||||| || || || Sbjct 23590 GCTGCGATAGCCTATGGTCTGGACAAAAA 23562 Score = 98.7 bits (108), Expect = 6e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||||||||||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 21820 GGTATTCCTCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 21761 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || || || ||||| ||||| Sbjct 21760 AATGGCATCCTCAACGTGTCTGCTGTGGATAA 21729 Score = 98.7 bits (108), Expect = 6e-15 Identities = 76/89 (85%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||||||||||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 21986 GGTATTCCTCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 21927 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGA 476178 ||||| || || || || |||| ||||| Sbjct 21926 AATGGCATCCTCAACGTGTCTGC-TGTGA 21899 Score = 86.0 bits (94), Expect = 4e-11 Identities = 219/328 (67%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||| || || ||||| ||||| |||| || || || || | | | ||||| || Sbjct 23238 ACTGCATGCGAGCGTGCAAAGCGTACTCTGTCATCCAGCACGCAGGCCAGTATTGAAATT 23179 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 |||||||| | ||| || ||||| | | || ||||| || ||| || ||||| Sbjct 23178 GATTCTCTCTATGAGGGTATTGACTTCTACACATCCATTACCAGAGCTCGCTTCGAAGAG 23119 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| ||||| | || | || || || ||| | | || | ||| | Sbjct 23118 CTGAATGCTGACCTCTTCCGCGGCACCCTGGATCCGGTGGAAAAGGCCCTGCGGGATGCC 23059 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||||| |||||||| || ||||||| || || || || || || || || | || ||| Sbjct 23058 AAACTAGACAAATCGCAGATCCATGACATCGTGCTGGTTGGTGGGTCTACTCGCATCCCA 22999 Query 475736 AAAATAAGAGAAA-TGCTTTCATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTAA 475793 || || ||||| |||| || | | || ||||| ||| || | || | || | | Sbjct 22998 AAGATTC-AGAAACTGCTG-CAGGACTTCTTCAATGGCAAAGAGCTGAACAAGAGCATCA 22941 Query 475794 ATCCTGATGAAGCTGTTGCATATGGAGC 475821 |||||||||||||||| || || || || Sbjct 22940 ATCCTGATGAAGCTGTGGCTTACGGTGC 22913 >seq15821 Length=35697 Score = 105 bits (116), Expect = 4e-17 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| ||||| | | |||||| || ||||| |||||||||||||| | || Sbjct 664 TTGTAGTCAGACAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGC 605 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||| ||||| ||||||||||| || ||||| || ||| ||||| || ||| Sbjct 604 TGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCA 545 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | ||||||||| || || || || || || ||||| || ||||| || Sbjct 544 CTGGGCTCCACTTCAAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACAAAAATCTG 489 >seq5826 Length=5185 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| ||||| || || || | || ||||| |||||||| |||||||| Sbjct 4419 ATCTTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGGAGGAATGCCTTCCTT 4478 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| |||||| ||||| || ||| || | | ||| ||||| || Sbjct 4479 GTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGAT 4538 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || ||||| || || || || Sbjct 4539 TGTCTTGCCGGTCAGGGTCTTCACAAAGATCTG 4571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265665261408836