Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq35106 250 3e-61 >seq35106 Length=23935 Score = 250 bits (276), Expect = 3e-61 Identities = 653/990 (66%), Gaps = 7/990 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || || |||| ||||| || || || |||||| || ||| || | Sbjct 12238 TGTGTCGCAAATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTGTCAAACT 12297 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| | ||||| || |||||| ||| || | Sbjct 12298 TATTAGCAAAGAAGTGGTG---GTTTCGTAGCACCCAGTTCAGGTCTCCTACCCCAAAAA 12354 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| ||||| | || || || |||| || ||||| | || ||||| | ||| | Sbjct 12355 CACAGACAGAACGAACATGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTAGACACAT 12414 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||| ||||||||||| | || | ||| || || |||| | Sbjct 12415 CACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATATCAGAAATGTCAT 12474 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || || | ||| ||||| || || | || || | ||| | || |||||| Sbjct 12475 ACTTGT-CACTAGAAGAAACTGCACCCGGGACTTCAGGGATTCTCTGAATTGTTGCCCAC 12533 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 || | || || |||||||| ||||| || | ||| || || |||| ||| ||| Sbjct 12534 AGATACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATTAACTTAAGTATTTTGCTG 12593 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | |||| || | |||| | || ||||| || || || || || || Sbjct 12594 CTTTCTAATACGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 12653 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || || | | ||| || | |||||| || ||||| | || | Sbjct 12654 ATTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTTGATTTTGCCATCA 12713 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 || | | | || | || |||||||| ||| || | ||||| ||| || || Sbjct 12714 ACAATCTCATGGTGTTTTTTCCACCTTACCTCTTTATAAACGGGCATTTTTTCTGTTTCC 12773 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||||| |||| | || | ||| | | || || || || |||| ||||| | Sbjct 12774 AAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTATA 12833 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 |||||||| | || || | |||||| | ||||||||| || | || || ||| Sbjct 12834 GGAAAGTCCATGCCACAGAGGTTTATTAGGTACTTCCAGTTTGAACTTCTTCTGTAGAGG 12893 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||| ||||| ||||||||||| | |||||| ||||| || || || ||||| Sbjct 12894 TCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATATACGACACTCTCT 12953 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | ||||| | ||| || ||||| ||||| || || |||||| ||| || |||| Sbjct 12954 AACTGACTGGAAATAAATACATTATCAAAACATGAGACTATTCCCTTCACAGCAGCAAAG 13013 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || | || | | |||| || || || | ||| || | |||||||| || ||||| Sbjct 13014 AA-AGATTCTGGAGACTTTTTATCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGAT 13072 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || || | |||||| || || |||| | ||| | ||||| || || Sbjct 13073 TGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTACTGAGTAAGCAAT 13132 Query 160943 CGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAA 161002 ||||| || | || || ||| || | | | | ||| || | ||||||| | || Sbjct 13133 TGGAAATTCTGCTTCTTCATCACTGAGAGGTTCCATAATGTATTTCCTCGTCTTGGTGAA 13192 Query 161003 ATAATCACAATCCCGCGTCATGTTGATATA 161032 || ||||| || |||||||| ||||| Sbjct 13193 GTAGTCACAGTCTGCTGTCATGTTAATATA 13222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576796336429320