Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq36995 167 3e-35 seq42226 158 1e-32 seq35093 152 6e-31 seq27031 152 6e-31 seq32658 147 3e-29 seq40493 138 1e-26 seq11613 125 9e-23 seq25467 105 8e-17 seq40891 102 1e-15 >seq36995 Length=1691 Score = 167 bits (184), Expect = 3e-35 Identities = 158/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || ||||| || ||||||||||| |||| || Sbjct 1014 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACCGCCGTCTGGATCTCCCGCGACGTGA 1073 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 1074 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAAA 1133 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 1134 TGTCGTTGACAAAAGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 1193 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1194 GCACCTGCTTCAGCACCTTGTA 1215 >seq42226 Length=984 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | || ||||| || ||||||||||| |||| || Sbjct 196 GCTTGGCCAGCTCGCCAGGCAGCAGGAGCCGCACCGCCGTCTGGATCTCCCGCGACGTGA 255 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || ||||||| || ||||||| |||| | Sbjct 256 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCTGGCGATGCGCTCGAAGA 315 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||| | ||| | |||| ||||||||| |||||||| Sbjct 316 TGTCGTTGACGAAGGAGTTCATAATGCTCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 375 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 376 GCACCTGCTTCAGCACCTTGTA 397 >seq35093 Length=1126 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | || |||| || ||||||||||| |||| || Sbjct 336 GCTTGGCCAGCTCGCCAGGCAGCAGGAGCCGCAGCGCCGTCTGGATCTCCCGCGACGTGA 395 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || ||||||| || ||||||| |||| | Sbjct 396 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCTGGCGATGCGCTCGAAGA 455 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||| | ||| | |||| ||||||||| |||||||| Sbjct 456 TGTCGTTGACGAAGGAGTTCATAATGCTCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 515 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 516 GCACCTGCTTCAGCACCTTGTA 537 >seq27031 Length=823 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || ||||| || ||||| ||||| |||| || Sbjct 495 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACCGCCGTCTGCATCTCCCGCGACGTGA 436 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || || |||| | ||||||| |||| | Sbjct 435 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGTCTCGCCGGCGATGCGCTCGAAGA 376 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 375 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 316 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 315 GCACCTGCTTCAGCACCTTGTA 294 >seq32658 Length=900 Score = 147 bits (162), Expect = 3e-29 Identities = 165/220 (75%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || ||||| || ||||||||||| |||| || Sbjct 597 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACCGCCGTCTGGATCTCCCGCGACGTGA 656 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCC---GGCCTCGGTGCCGATGCGGTCGA 1254459 | || ||||||||| || ||||||| ||| || |||| | ||||||| |||| Sbjct 657 TGGTCGAGCGCTTGTTGTAGGGCGCCAGGAGGCGCGAGGTCTCGCCGGCGATGCGCTCGA 716 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| || |||||||||| ||| | |||| ||||||||| ||||| Sbjct 717 AGATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGG 776 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 ||||| ||||||| ||||||||||||| | | |||||| Sbjct 777 GGTGCTCCTGCTTCAGCACCTTGTAGACGTAGATCGAGTA 816 >seq40493 Length=7990 Score = 138 bits (152), Expect = 1e-26 Identities = 152/202 (75%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || ||||| || ||||||||||| |||| || Sbjct 4272 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACCGCCGTCTGGATCTCCCGCGACGTGA 4331 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | | |||||||||| || |||| || |||||| | ||||||| |||| | Sbjct 4332 TGGGCGGGCGCTTGTTCCAG-GCGCGAG-------GCCTCGCCGGCGATGCGCTCGAAGA 4383 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 4384 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 4443 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 4444 GCACCTGCTTCAGCACCTTGTA 4465 >seq11613 Length=32381 Score = 125 bits (138), Expect = 9e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | |||||| ||||| ||||| ||||| || | | || Sbjct 2131 GCTTGGCCAGCTCTCCAGGGAGCAGCAGGCGTACGGCCGTCTGAATCTCCCGGGAGGTGA 2072 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| ||| || ||||||| || | | Sbjct 2071 TGGTGGAGCGCTTGTTGTAATGGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCAAAGA 2012 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 2011 TGTCGTTAACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCAGGGT 1952 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 1951 GGACCTGCTTCAGCACCTTGTAGA 1928 >seq25467 Length=22391 Score = 105 bits (116), Expect = 8e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | ||||| ||||| ||||| | |||||| || || Sbjct 13707 GCTTGGCCAGCTCGCCAGGCAGCAGGAGGCGGACGGCCGTCTGCACCTCGCGGCTGGTGA 13648 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||| | ||| | |||||||| || |||||| | | | | || || | | Sbjct 13647 TGGTGGAGCGGTGGTTGTACTGCGCCAGGCGCGAGGCCTCAGAGGCCAGCCGCTCAAAGA 13588 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 13587 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCAGTGTCGGGGT 13528 Query 1254523 GCACCTGC 1254530 | |||||| Sbjct 13527 GTACCTGC 13520 >seq40891 Length=31075 Score = 102 bits (112), Expect = 1e-15 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889 ||||||||| || ||||||| |||||||||||||| |||||||||| ||| | | || Sbjct 160 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 101 Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943 ||| |||| ||||||| ||| ||||| ||||||||| |||| ||| || || Sbjct 100 GTACTGGATGGGGAAGATGACGAAGCGCCGGGGGTTGTCCCGCAGCAGCGGCTC 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6102329635123419