Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq36995 210 3e-48 seq32658 196 8e-44 seq42226 192 9e-43 seq35093 192 9e-43 seq27031 192 9e-43 seq40493 185 1e-40 seq11613 174 2e-37 seq25467 170 3e-36 seq40891 105 1e-16 >seq36995 Length=1691 Score = 210 bits (232), Expect = 3e-48 Identities = 200/256 (78%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| || ||| ||||||| |||||| ||| Sbjct 975 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACAGCATGCTTGGCCAGCTCGCCGGGCA 1034 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||| || ||||||||||| || | ||| || ||||||||| | Sbjct 1035 GCAGGAGCCGCACCGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 1094 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| |||||||||||||| ||||||| Sbjct 1095 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAAATGTCGTTGACAAAAGAGTTCA 1154 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 1155 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 1214 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 1215 ACACGTAGATCGAGTA 1230 >seq32658 Length=900 Score = 196 bits (216), Expect = 8e-44 Identities = 199/259 (77%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 558 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACAGCGTGCTTGGCCAGCTCGCCGGGCA 617 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||| || ||||||||||| || | ||| || ||||||||| | Sbjct 618 GCAGGAGCCGCACCGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGG 677 Query 1485590 GCGCCAGGCGGC---CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 |||||||| ||| || |||| | ||||||| |||| ||||||||||| || |||| Sbjct 678 GCGCCAGGAGGCGCGAGGTCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGT 737 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||| ||| | ||| ||||||||| |||||||||| ||||||| ||||||| Sbjct 738 TCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCTCCTGCTTCAGCACCT 797 Query 1485707 TGTAAACAAAGGACGAGTA 1485725 |||| || || |||||| Sbjct 798 TGTAGACGTAGATCGAGTA 816 >seq42226 Length=984 Score = 192 bits (212), Expect = 9e-43 Identities = 187/241 (78%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| || || || ||||| |||||| ||||||| ||||| ||| Sbjct 157 TGTACTTGGTGACAGCCTTAGTGCCTTCGGAGACAGCGTGCTTGGCCAGCTCGCCAGGCA 216 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||| || ||||||||||| || | ||| || ||||||||| | Sbjct 217 GCAGGAGCCGCACCGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 276 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| || ||||||| |||| ||||||||||| || ||||||| Sbjct 277 GCGCCAGGCGCGAGGCCTCGCTGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 336 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 337 TAATGCTCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 396 Query 1485710 A 1485710 | Sbjct 397 A 397 >seq35093 Length=1126 Score = 192 bits (212), Expect = 9e-43 Identities = 196/256 (77%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| || || || ||||| |||||| ||||||| ||||| ||| Sbjct 297 TGTACTTGGTGACAGCCTTAGTGCCTTCGGAGACAGCGTGCTTGGCCAGCTCGCCAGGCA 356 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||| || ||||||||||| || | ||| || ||||||||| | Sbjct 357 GCAGGAGCCGCAGCGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 416 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| || ||||||| |||| ||||||||||| || ||||||| Sbjct 417 GCGCCAGGCGCGAGGCCTCGCTGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 476 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 477 TAATGCTCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 536 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 537 ACACGTAGATCGAGTA 552 >seq27031 Length=823 Score = 192 bits (212), Expect = 9e-43 Identities = 189/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 534 TGTACTTGGTGACAGCCTTGGGGCCCTCGGAGACAGCGTGCTTGGCCAGCTCGCCGGGCA 475 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||| || ||||| ||||| || | ||| || ||||||||| | Sbjct 474 GCAGGAGCCGCACCGCCGTCTGCATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 415 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| || |||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 414 GCGCCAGGCGCGAGGTCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 355 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 354 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 295 Query 1485710 AAAC 1485713 | || Sbjct 294 ACAC 291 >seq40493 Length=7990 Score = 185 bits (204), Expect = 1e-40 Identities = 194/256 (76%), Gaps = 8/256 (3%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| || ||| ||||||| |||||| ||| Sbjct 4233 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACAGCATGCTTGGCCAGCTCGCCGGGCA 4292 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||| || ||||||||||| || | ||| | ||||||||| Sbjct 4293 GCAGGAGCCGCACCGCCGTCTGGATCTCCCGCGACGTGATGGGCGGGCGCTTGTT----- 4347 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||| ||||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 4348 ---CCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 4404 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 4405 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 4464 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 4465 ACACGTAGATCGAGTA 4480 >seq11613 Length=32381 Score = 174 bits (192), Expect = 2e-37 Identities = 192/256 (75%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| |||||||| || || ||| ||||||| || || | | Sbjct 2170 TGTACTTGGTGACAGCCTTGGTGCCCTCTGACACAGCATGCTTGGCCAGCTCTCCAGGGA 2111 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| ||||| ||||| ||||| |||| | ||| ||| ||||||||| Sbjct 2110 GCAGCAGGCGTACGGCCGTCTGAATCTCCCGGGAGGTGATGGTGGAGCGCTTGTTGTAAT 2051 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || ||||||| || | |||||||| || || ||||||| Sbjct 2050 GGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCAAAGATGTCGTTAACGAAGGAGTTCA 1991 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| ||||| |||||||| |||||||||| Sbjct 1990 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCAGGGTGGACCTGCTTCAGCACCTTGT 1931 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 1930 AGACATAGATGGAGTA 1915 >seq25467 Length=22391 Score = 170 bits (188), Expect = 3e-36 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||| ||| Sbjct 13746 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCAGGCA 13687 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||| ||||| ||||| | ||||||| || ||| ||| ||| | ||| || | Sbjct 13686 GCAGGAGGCGGACGGCCGTCTGCACCTCGCGGCTGGTGATGGTGGAGCGGTGGTT-GTAC 13628 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 |||||||||| |||||| | | | | || || | ||||||||||| || |||||| Sbjct 13627 TGCGCCAGGCGCGAGGCCTCAGAGGCCAGCCGCTCAAAGATGTCGTTGACGAAGGAGTTC 13568 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 ||||| ||| | ||| ||||||||| ||||||||| |||||| Sbjct 13567 ATGATGCTCATGGCCTTGGAGGAGATGCCAGTGTCGGGGTGTACCTGC 13520 >seq40891 Length=31075 Score = 105 bits (116), Expect = 1e-16 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| ||||||||||||||||| |||||||||| ||| || ||| Sbjct 159 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 100 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||||||| | || ||||| |||||| || || ||||||||||| Sbjct 99 TACTGGATGGGGAAGATGACGAAGCGCCGGGGGTTGTCCCGCAGCAGCGGCTC 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7910012106103473