Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq30356 102 6e-16 seq31714 87.8 1e-11 >seq30356 Length=2418 Score = 102 bits (112), Expect = 6e-16 Identities = 276/416 (66%), Gaps = 6/416 (1%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 ||| | || || || |||||||||||||| | || || ||||| || || || ||||| Sbjct 1571 GCACTGACGTTCAGGATACCATTGGCATCGATGTCGAAAGTGACCTCGATCTGGGGGACT 1512 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | | || || ||||| || | | ||| | ||||| || || ||||| Sbjct 1511 CCACGGGGTGCTGGGGGGATGCCCGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCTTTC 1452 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAAT 281603 || | | ||||||||| | | |||| || | ||| | | || || || || | Sbjct 1451 GTCATAGCCCTCTCACCCTCGTACACCTGGACCAGGACACTGC--TCTGGTTGTCCGAGT 1394 Query 281604 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 | || || || |||| ||| ||| ||||| || ||||| | | || | | Sbjct 1393 AGGTGGTGAAGG-TCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGCA 1335 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||||||||||| || | || || || ||||| |||||||| | |||| Sbjct 1334 GTCATCACTCCACCAGCTGTCTCAATGCCCAGGGACAGAGGGGTGACATCCAACAGGAGC 1275 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || || | || ||| | | || | || ||||||||||| | |||||||||| Sbjct 1274 AGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCACCA 1215 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 281838 || |||||||| ||||| || || | | | || |||| ||| |||||||| || Sbjct 1214 TAAGCAACAGCCTCATCGGGGTTGATGCTCTTGTTGAGTTCTTTGCCATTGAAGAA 1159 >seq31714 Length=36980 Score = 87.8 bits (96), Expect = 1e-11 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || ||| |||| || || ||||| || |||||| | ||| | | ||||| Sbjct 21560 TGTTGTGGCTACAGTAGCGTTCGGAATGGGCATCAATAAAGCAGATATCCGGACAGTTAT 21619 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 || ||||| || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 21620 CCACTACGGTGCCCCTAAGGAGATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 21679 Query 131296 TGATGG 131301 |||||| Sbjct 21680 TGATGG 21685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737753043973182