Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq13775 138 2e-27 >seq13775 Length=43108 Score = 138 bits (152), Expect = 2e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438 || ||||||||||| ||| | |||||||| || |||||||| ||||||||||| ||||| Sbjct 17782 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATACTTGGATACAGTGTTCTTCATC 17723 Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498 || ||||| || ||||| || |||| || || || || ||||| ||||| || ||||| Sbjct 17722 CTGAGGAAGAAATTTAACCAGATTAGTTTCCTCCATGTCTATCACCATTTCACCATGTTC 17663 Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 || || | ||| | |||||||| ||| ||||||| || || Sbjct 17662 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 17622 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600 || ||||| || |||||| ||||||| ||||| ||||| |||||||| | |||||||| Sbjct 15418 GCTTTTTTTGGAGCTCAGATGAATTCGTTTATTCATGTCATTATGTACATGTATTATGGA 15359 Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660 | || || ||||| | || ||| | || || | ||||||||||| ||| | || ||| Sbjct 15358 TTAGCTGCCTGTGGCCCTAAATTTCAGAAATACCTGTGGTGGAAGCGATACTTGACCATA 15299 Query 58661 ATGCAATTGGTA 58672 ||||| ||||| Sbjct 15298 TTGCAAATGGTA 15287 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 58669 GGTACAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTT 58728 ||| || |||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 14785 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 14726 Query 58729 TCCAAAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGG 58788 || ||||||| ||| ||| || || ||||| | || || || || || |||||||| Sbjct 14725 CCCTAAATGGATGCACTGGAGTGTCATTTTCTATGCCATCACCTTCATTTTCTTGTTTGG 14666 Query 58789 TAACTTCTATTTTAGAACATACAAG 58813 ||||||||| | | | ||||| ||| Sbjct 14665 TAACTTCTACTATCGGACATATAAG 14641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902749372247520