Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq15821 147 2e-30 seq5826 147 2e-30 seq37518 100 3e-16 >seq15821 Length=35697 Score = 147 bits (162), Expect = 2e-30 Identities = 154/200 (77%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| ||||| || || ||||| ||| || ||| ||| | || || |||||||||| Sbjct 911 GGTGGATTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGACCA-TCTTCCAGCTGCTTGC 853 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| |||||| || || || |||||||||||||| |||||| || Sbjct 852 CAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCT 793 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| |||||||||| |||| ||||| ||| ||||||||||| | Sbjct 792 TCACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGG 733 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 732 TCTTCACAAAGATCTGCATG 713 Score = 132 bits (146), Expect = 5e-26 Identities = 153/201 (76%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| ||||| || || ||||| || || ||| ||| | || || |||||||||| Sbjct 455 GGTGGATTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGACCA-TCTTCCAGCTGCTTGC 397 Query 133522 CCGCGTAAATG-AGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 | ||| || || |||| |||||| || || || |||||||||||||| |||||| | Sbjct 396 CAGCG-AAGTGCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCC 338 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | ||||| ||||| |||||||||| |||| ||||| ||| ||||| ||||| Sbjct 337 TTCACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGG 278 Query 133641 GTTTTTACGAAAATCTGCATG 133661 || || || || ||||||||| Sbjct 277 GTCTTCACAAAGATCTGCATG 257 Score = 131 bits (144), Expect = 2e-25 Identities = 154/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || ||||| || || ||| | | | || || |||| Sbjct 689 ATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCA-TCTTCCAGCT 631 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || |||| |||| |||||| || || || |||||||||||||| ||||| Sbjct 630 GCTTGCCAGCAAAAATAAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCT 571 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| ||||| |||||||||| || | ||||| ||| || || | Sbjct 570 TGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTCTTCCCAG 511 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 |||| || || || |||||||||||| Sbjct 510 TCAGGGTCTTCACAAAAATCTGCATG 485 >seq5826 Length=5185 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | |||||| || ||||| || ||||| || || ||| | || || ||| Sbjct 4825 AAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGC 4884 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | ||||||| |||||| || ||||| |||||||||||||| |||| Sbjct 4885 TGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATC 4944 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||||| ||||| |||||||||| || | ||||| ||| ||||| Sbjct 4945 TTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCA 5004 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 5005 GTCAGGGTCTTCACGAAGATCTGCAT 5030 Score = 143 bits (158), Expect = 3e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||| ||||| || ||||| || || ||| | || || ||| Sbjct 4369 AAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGC 4428 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | ||||||| |||||| || ||||| |||||||||||||| |||| Sbjct 4429 TGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATC 4488 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||||| ||||| ||||||| || || | ||||| || |||||| Sbjct 4489 TTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATTGTCTTGCCG 4548 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 ||||| || || || || ||||||||| Sbjct 4549 GTCAGGGTCTTCACAAAGATCTGCATG 4575 Score = 134 bits (148), Expect = 1e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | |||||| || ||||| || ||||| || || ||| | ||| || ||| Sbjct 4597 AAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGCCCGTCTTCCAGC 4656 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || |||| ||||||||| || || |||||||||||||| |||| Sbjct 4657 TGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATC 4716 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||||| ||||| |||||||||| || | ||||| ||| ||||| Sbjct 4717 TTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCA 4776 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || || || ||||||||| Sbjct 4777 GTTAGGGTCTTCACAAAGATCTGCATG 4803 >seq37518 Length=11320 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 ||||||| | | | ||||| || || || | || ||||||||||| ||||| || Sbjct 9634 CTCATCCTTGCTGGTATACTCCACTATTTCTGTACAGAGATTGCTGCACTTGATGGTCCC 9575 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCC 148969 || ||||| ||||||||||| | |||||| | ||| ||||| |||||||||||| ||| Sbjct 9574 CAGGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTAGAGCATGTACGGTGTGCC 9515 Query 148970 AGTTTCCACCTGCGTTTC 148987 |||||| ||||| ||| Sbjct 9514 CGTTTCCGTCTGCGATTC 9497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483066651964680