Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq16879 141 1e-28 seq35106 134 2e-26 >seq16879 Length=34369 Score = 141 bits (156), Expect = 1e-28 Identities = 401/607 (66%), Gaps = 13/607 (2%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | ||||| | || | ||| || ||||||| |||| | || | |||| Sbjct 24958 GCCAGCTCTCTGGGGGAGAGAAAATCTTCCACATGTATGAAAGAGTCTGCTGGAATGTAA 25017 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || || || || ||||| || | || ||||| | |||||| | || |||| ||||| Sbjct 25018 TTCTCATAGTTTTCTCTGGAAGGGCCCAGTACAACGGGTACTGATCCGGCCAGAAGAGCA 25077 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| ||||| ||||||||||| || |||| | || || ||||| | || |||||| Sbjct 25078 TTGTAAAGTTTCTCGGTAATATAATCTTTGTGGATTGAATTTTCAAAGGAAAGGTAGAAT 25137 Query 177126 TTACA--GGAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183 || || | |||||||| || || |||| | ||| | || ||||| | | | Sbjct 25138 TTGCAAGTGGAGATAGTA--GGAATCAAGTTTTTATCATTGACGTAGTCTCCAAAGGCTT 25195 Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACG 177242 ||||| ||| || || |||| ||| || ||||| ||| || || || || || Sbjct 25196 GTCCGTAGGTATGGATTTCAATGTATTTGCTAAGCTCATTGTAATA-CTTGACTCGAGCG 25254 Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACGGGA 177302 || || |||||| || || || ||||| || || || || ||| || || Sbjct 25255 TGCTCAGGGTTCCAGTTACTTACAACCCAACAGACCAAGTTTTCCTTACTTGGCAC---- 25310 Query 177303 TTCGATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | ||| | || | | | || | | | | ||||| ||||| ||||| || || Sbjct 25311 TTCAAATGTAAAGGAGCTTGTACCGACCATCATGAAGCCATAAGGCACCTGAATGTCTGA 25370 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC-TTGTTTGAAGGGGC 177420 || || | || || | || || || || |||| ||| || || | ||| || | Sbjct 25371 ATCACGCCGATAAGTCAGGGTCAGGTTAAAGAGGTGTTCAATGCCACTCTTTTGTGGAG- 25429 Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCG 177480 | | | | || || || ||||||||||| |||||||| || || | ||| |||| || | Sbjct 25430 TATGAGTTGGAGACTCCAAGTTCATCCAAATCCACTTCTGGAATGGTGGCCTGGCTTGCT 25489 Query 177481 TAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTT 177540 ||||| | || |||| || || || ||||| |||| || || |||| || | Sbjct 25490 GAGGTAAATTAGTCAGATCCCAGCTAATGTCCCTGTGATGAATGAGAACAGCATGGGATC 25549 Query 177541 TGTAATA 177547 ||| ||| Sbjct 25550 TGTTATA 25556 >seq35106 Length=23935 Score = 134 bits (148), Expect = 2e-26 Identities = 528/824 (64%), Gaps = 20/824 (2%) Strand=Plus/Plus Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 || || || || || || || || || || || ||||| || || || | || || | Sbjct 12348 CCAAAAACACAGACAGAACGAACATGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTA 12407 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 |||||| || || |||| |||||||| || ||||| | | || | ||| || || Sbjct 12408 GACACATCACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATATCAGAA 12467 Query 162301 GTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGT 162359 |||| ||||||| |||| || | || || || || || | || | |||||| | || Sbjct 12468 ATGTCATACTTGT-CACTAGAAGAAACTGCACCCGGGACTTCAGGGATTCTCTGAATTGT 12526 Query 162360 AGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGAC 162419 |||||||| | || ||||| || || || || || | |||||| || |||| | | Sbjct 12527 TGCCCACAGATACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATTAACT---TAAG 12583 Query 162420 CGTTTTATCG---TATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCT 162476 |||| | | || | ||| || | ||| | || | ||| || || || Sbjct 12584 TATTTTGCTGCTTTCTAATACGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACT 12643 Query 162477 ACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTAC 162536 ||||||||| | || | | | ||| || | | ||||||| || ||||| | Sbjct 12644 ACCAGAAAAAATTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTTGAT 12703 Query 162537 CATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG-- 162594 | || || || | | | || || ||||||| || ||| || ||||| Sbjct 12704 TTTGCCATCAACAATCTCATGGTGTTTTTTCCACCTTACCTCTTTA----TAAACGGGCA 12759 Query 162595 --TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTA 162652 | ||| || || | ||||| ||| | ||| || | | || || || Sbjct 12760 TTTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCCT 12819 Query 162653 GATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGC 162712 | |||||||| | |||||||| |||| ||||| || || | || ||||| || | Sbjct 12820 GGTTGGTCTTTATAGGAAAGTCCATGCCACAGAGGTTTATTAGGTACTTCCAGTTTGAAC 12879 Query 162713 TGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGT 162772 | || ||| || || | | ||||| | || ||||| || | ||||| || || | Sbjct 12880 TTCTTCTGTAGAGGTCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCAT 12939 Query 162773 ACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCA 162832 | ||||| ||||| ||| | ||| | ||| ||||| || ||||| || ||||| ||| Sbjct 12940 ATACGACACTCTCTAACTGACTGGAAATAAATACATTATCAAAACATGAGACTATTCCCT 12999 Query 162833 TCACGGC--CAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATT 162890 |||| || || || | || || ||| |||| || || | |||||| | ||| Sbjct 13000 TCACAGCAGCAAAGAAAGATTCTGGAGACTTTT--TATCAACATGAATGCAGTAAAAATT 13057 Query 162891 CTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCAC 162950 ||||||||| ||||| | || || | ||| || | |||||| || || || | ||||| Sbjct 13058 CTGAGGGGCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCAC 13117 Query 162951 GATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 | || || || || || || || || || || |||||||| Sbjct 13118 TACTGAGTAAGCAATTGGAAATTCTGCTTCTTCATCACTGAGAG 13161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578008247947200