Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq40891 89.7 1e-12 seq13427 87.8 4e-12 >seq40891 Length=31075 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 ||||||||||| || ||||| ||||||||||| ||| |||| | || |||||| Sbjct 3038 GTAGCTTTTGCAGCAGTGGAAGGAATATTCTTTTCTGGTTCTTTTGCATCAATTTTTTGG 3097 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 || |||||| | ||||| |||||||||||| | || || || || ||||| |||||| Sbjct 3098 CTGAAGAAGAGAGGATTAATGCCTGGACTCACTTTTTCTAACGAACTCATCAGTAGAGAT 3157 Query 131984 GA 131985 || Sbjct 3158 GA 3159 >seq13427 Length=23672 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 131858 AGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATC 131917 ||| | || || |||||| |||||||| || |||||||| ||| | || |||||| Sbjct 10423 AGAGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATA 10482 Query 131918 TTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCG 131977 |||||||| |||||| | || ||||||||||||| | || |||||| || | || Sbjct 10483 TTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGC 10542 Query 131978 AGAGATGA 131985 |||||||| Sbjct 10543 AGAGATGA 10550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185921619672327