Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq15821 87.8 1e-12 seq5826 84.2 1e-11 >seq15821 Length=35697 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| |||||||| ||||| || ||||| | || |||| || || || || || Sbjct 904 TCTTTTTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAG 845 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| | ||||||||| | || | ||||| ||||| || || |||| ||| Sbjct 844 ATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CATT 786 Query 33679 GTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| |||||| || | ||||| || | ||||| || || || || | || || || Sbjct 785 CTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 726 Query 33738 AAAGATCTGCAT 33749 |||||||||||| Sbjct 725 AAAGATCTGCAT 714 >seq5826 Length=5185 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | |||||| || || ||| || || || |||||||| || || Sbjct 4576 CCCCCTCTGAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4635 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| |||| |||| || || || ||||| |||| | |||||| || | || Sbjct 4636 AAGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 4695 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | | | ||| |||||| || | ||||| Sbjct 4696 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCCAC 4754 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || |||| || || |||||||||||||| Sbjct 4755 CTCCAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCAT 4802 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33519 GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATC 33578 || |||||| |||| || | ||| || || || ||| ||| || || |||||||| || Sbjct 4344 GTTACCACCCCTCAGGCGCAGCACTAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 4403 Query 33579 GGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTG 33638 || || ||||| | || |||| || || || || || || | | |||||||||| | Sbjct 4404 AGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGG 4463 Query 33639 CGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATT 33697 || | ||||| ||||| || || || | ||| ||| |||||| || | | Sbjct 4464 AGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGA-CATTCTCAATGGTGTCACTGGGCT 4522 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||||| || || || || | || || |||||||||||||| Sbjct 4523 CAACTTCCAGGGTGATTGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328469215669440