Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq20752 116 1e-22 seq48710 93.3 1e-15 >seq20752 Length=22675 Score = 116 bits (128), Expect = 1e-22 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1242 GCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 1301 Query 2829 CCGGGCTTCAGC 2840 |||||||||||| Sbjct 1302 CCGGGCTTCAGC 1313 Score = 113 bits (124), Expect = 1e-21 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||| | Sbjct 14305 GCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACCGAAGATCTAAAGGTCCCTGGTTCAATC 14246 Query 2829 CCGGGCTTCAGC 2840 |||||||||||| Sbjct 14245 CCGGGCTTCAGC 14234 >seq48710 Length=85606 Score = 93.3 bits (102), Expect = 1e-15 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2770 CTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCC 2829 |||||||||||||||||||||| || |||||||||||||||||| ||||||||| | || Sbjct 61543 CTGAAGTAGCTCAGTTGGGAGACCAATAGACTGAAGATCTAAAGATCCCTGGTTTGATCC 61602 Query 2830 CGGGCTTCAGC 2840 |||||| ||| Sbjct 61603 TGGGCTTAAGC 61613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15839440183515