Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq36995 179 5e-39 seq42226 167 3e-35 seq27031 167 3e-35 seq32658 165 1e-34 seq35093 163 4e-34 seq40493 147 3e-29 seq25467 132 7e-25 seq11613 131 2e-24 seq40891 98.7 1e-14 seq9231 91.5 2e-12 >seq36995 Length=1691 Score = 179 bits (198), Expect = 5e-39 Identities = 178/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 1215 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 1162 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| |||||||||||||| |||| ||||||| | ||||||| ||| Sbjct 1161 GGCATCATGAACTCTTTTGTCAACGACATTTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 1102 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| || ||||| Sbjct 1101 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCGGTGCGG 1042 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||| || |||||||||||||||| Sbjct 1041 CTCCTGCTGCCCGGCGAGCTGGCCAAGCATGCTGTCTCCGAGGGCACCA 993 >seq42226 Length=984 Score = 167 bits (184), Expect = 3e-35 Identities = 174/227 (77%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 397 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 344 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 || |||||||| || ||||||||||| |||| ||||||| || ||||||| ||| Sbjct 343 AGCATTATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCAGCGAGGCCTCGCGC 284 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| || ||||| Sbjct 283 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCGGTGCGG 224 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || | ||| ||||| ||||||| |||||| |||||||| ||||| Sbjct 223 CTCCTGCTGCCTGGCGAGCTGGCCAAGCACGCTGTCTCCGAAGGCAC 177 >seq27031 Length=823 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 294 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 347 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | |||| || ||| Sbjct 348 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGACCTCGCGC 407 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||| ||||| || ||||| Sbjct 408 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATGCAGACGGCGGTGCGG 467 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| |||||| |||||||||||| ||| Sbjct 468 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCTGTCTCCGAGGGCCCCA 516 >seq32658 Length=900 Score = 165 bits (182), Expect = 1e-34 Identities = 186/247 (75%), Gaps = 9/247 (4%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| || ||||||||||||| ||||||| ||||||| || || |||| Sbjct 816 TACTCGATCTACGTCTACAAGGTGCTGAAGCAGGAGCACCCCGACAC-----GGGCATC- 763 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||| ||||| ||||||||||| || ||||||||||| |||| ||||||| | Sbjct 762 TCGTCCAAGGCCATGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCC 703 Query 725019 ACCGAGGCCGGTCGCCT---GGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 |||| || ||||| ||||| || |||||||||| || ||| |||| ||| Sbjct 702 GGCGAGACCTCGCGCCTCCTGGCGCCCTACAACAAGCGCTCGACCATCACGTCGCGGGAG 643 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| || ||||| || | ||| |||||| ||||||| |||||| ||||||||| Sbjct 642 ATCCAGACGGCGGTGCGGCTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCTGTCTCCGAG 583 Query 725136 GGCACCA 725142 ||||||| Sbjct 582 GGCACCA 576 >seq35093 Length=1126 Score = 163 bits (180), Expect = 4e-34 Identities = 173/227 (76%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 537 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 484 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 || |||||||| || ||||||||||| |||| ||||||| || ||||||| ||| Sbjct 483 AGCATTATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCAGCGAGGCCTCGCGC 424 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| || |||| Sbjct 423 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCGCTGCGG 364 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || | ||| ||||| ||||||| |||||| |||||||| ||||| Sbjct 363 CTCCTGCTGCCTGGCGAGCTGGCCAAGCACGCTGTCTCCGAAGGCAC 317 >seq40493 Length=7990 Score = 147 bits (162), Expect = 3e-29 Identities = 170/229 (74%), Gaps = 14/229 (6%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 4465 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 4412 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 4411 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 4352 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||| ||||||||| | ||| |||| ||||||||||| || ||||| Sbjct 4351 CTGG--------AACAAGCGCCCGCCCATCACGTCGCGGGAGATCCAGACGGCGGTGCGG 4300 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||| || |||||||||||||||| Sbjct 4299 CTCCTGCTGCCCGGCGAGCTGGCCAAGCATGCTGTCTCCGAGGGCACCA 4251 >seq25467 Length=22391 Score = 132 bits (146), Expect = 7e-25 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 724928 GCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTC 724987 |||||| |||||| || ||| |||| ||| |||| ||||| ||||||||||| Sbjct 13520 GCAGGTACACCCCGACAC---TGG--CATC-TCCTCCAAGGCCATGAGCATCATGAACTC 13573 Query 724988 GTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAA 725047 || ||||||||||| | || || | | | | |||||| |||||||||| | ||| Sbjct 13574 CTTCGTCAACGACATCTTTGAGCGGCTGGCCTCTGAGGCCTCGCGCCTGGCGCAGTACAA 13633 Query 725048 CAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGG 725107 | | ||| ||| ||| || |||||| | ||||| ||||| ||||| | ||| || Sbjct 13634 CCACCGCTCCACCATCACCAGCCGCGAGGTGCAGACGGCCGTCCGCCTCCTGCTGCCTGG 13693 Query 725108 CGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| ||||||| ||||||||||||||||||||||| Sbjct 13694 CGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 13728 >seq11613 Length=32381 Score = 131 bits (144), Expect = 2e-24 Identities = 176/244 (72%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||||| |||||||| ||||| |||| |||| Sbjct 1915 TACTCCATCTATGTCTACAAGGTGCTGAAGCAGGTCCACCCTGACACCGG-----CATC- 1968 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| |||| ||||| ||||||||||| || || |||||||| | || ||||||| Sbjct 1969 TCCTCCAAGGCCATGGGCATCATGAACTCCTTCGTTAACGACATCTTTGAGCGCATCGCT 2028 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || ||| |||||||| | | |||||||||| ||| ||| | | || ||||| Sbjct 2029 GGAGAAGCCTCCCGCCTGGCCCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATT 2088 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| ||||| |||||| | | | || || ||||||| ||| || || || |||||| Sbjct 2089 CAGACGGCCGTACGCCTGCTGCTCCCTGGAGAGCTGGCCAAGCATGCTGTGTCAGAGGGC 2148 Query 725139 ACCA 725142 |||| Sbjct 2149 ACCA 2152 >seq40891 Length=31075 Score = 98.7 bits (108), Expect = 1e-14 Identities = 91/114 (80%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||||| || ||||| ||||| ||| | |||||||||| ||||| Sbjct 47 GAGCCGCTGCTGCGGGACAACCCCCGGCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 106 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | ||||| ||| ||||||||||||||||| ||||| || |||||||| Sbjct 107 ATCTGGCAGATGTA-CAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 159 >seq9231 Length=1004 Score = 91.5 bits (100), Expect = 2e-12 Identities = 147/208 (71%), Gaps = 10/208 (5%) Strand=Plus/Minus Query 1816172 GTCTTGACGGCCGTGTCGACCAGGCCCTCGCGGCCGCCGATCATGTGCAAAAACATCTCG 1816231 ||||||||||| ||||||| || |||||||||||||| || ||| || || | |||| Sbjct 1004 GTCTTGACGGCGGTGTCGATGAGCCCCTCGCGGCCGCCCATGGCGTGGAAGAAGAACTCG 945 Query 1816232 CGCGAGTTGAGGCCGCGCTCGTACGAGTTGCGCACAAAGCCGCGGCTCTCGGGCGGCGGC 1816291 | | |||||||| | ||| ||||| ||| |||||||||||||||||| | | Sbjct 944 GTGGGGGTGAGGCCGGCCAGGTAGGAGTTCTCCACGAAGCCGCGGCTCTCGGGC--CCGT 887 Query 1816292 A--CGGCCTCGGCGTGCCGGTAGCAGCCCAGTGTGCGCGAACCCGACTCGGAGTGGATGC 1816349 | || ||| | | || ||||| |||| ||| |||| || |||||| Sbjct 886 AGTCGTCCTTGATGAAGTGG-GGCAGCGTCCGGTGCTTGAAGCCGA-----AGGGGATGC 833 Query 1816350 GCTGGCCCTCATTGCTCTGCTGGCCCAC 1816377 ||| ||||||| | ||||||| ||||| Sbjct 832 GCTTGCCCTCAACGTTCTGCTGACCCAC 805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7172158447130334