Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq5826 129 5e-25 seq15821 120 3e-22 >seq5826 Length=5185 Score = 129 bits (142), Expect = 5e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | |||||| ||| |||| ||||||||||| || ||||| Sbjct 4612 TCCTTCTGGATGTTGTAGTCAGACAAGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAG 4671 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | |||| || ||||||||| |||||| ||| | | Sbjct 4672 ATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTC 4731 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| ||||| || || || || | || |||||| Sbjct 4732 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACA 4791 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 4792 AAGATCTGCAT 4802 Score = 118 bits (130), Expect = 1e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | || ||| ||| | || ||||||||||| || || || Sbjct 4840 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAG 4899 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || |||||| || | ||||| || ||||||||| |||||| ||| | | | Sbjct 4900 ATGAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTC 4959 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 4960 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 5019 Query 35726 AATATCTGCATTCTG 35740 || ||||||||| || Sbjct 5020 AAGATCTGCATTTTG 5034 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| | || ||||||||||| || || || Sbjct 4383 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAA 4442 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || |||||| || | ||||| || ||||||||| |||||| ||| | | | Sbjct 4443 GATGAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 4502 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || || |||| ||||| || || || |||| || ||||| Sbjct 4503 CTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATTGTCTTGCCGGTCAGGGTCTTCAC 4562 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 4563 AAAGATCTGCAT 4574 >seq15821 Length=35697 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||| |||||||| |||| || ||| || | || ||||||||||| || || || Sbjct 904 TCTTTTTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAG 845 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | |||| || ||||||||| |||||| ||||| | | Sbjct 844 ATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 785 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||| | ||||| || || || |||| || |||||| Sbjct 784 TCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACA 725 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 724 AAGATCTGCAT 714 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||| |||||||| || | || ||| || | || ||||||||||| || || || Sbjct 448 TCTTTTTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAG 389 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || || |||||| || | |||| || ||||||||| |||||| ||||| | | Sbjct 388 TGCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 329 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||| | ||||| || || || |||| || |||||| Sbjct 328 TCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 269 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 268 AAGATCTGCAT 258 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | || || || | || ||||||||||| || ||||| Sbjct 676 TCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAA 617 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || |||||| || | |||| || ||||||||| |||||| ||||| | | Sbjct 616 ATAAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 557 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | ||||| || | ||||| || || || |||| || |||||| Sbjct 556 TCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACA 497 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 496 AAAATCTGCAT 486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450463354243560