Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5826 116 4e-21 seq15821 105 7e-18 >seq5826 Length=5185 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || |||||||| |||| ||| | ||| || ||||||||||| || ||||||||||| | | Sbjct 4576 CCCCCTCTGAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4635 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || |||| | ||| || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 4636 AA-GGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 4694 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 |||||||| || || || || || ||||| || | ||||| | ||||| Sbjct 4695 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCAC 4754 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || |||| || || || || || ||||| Sbjct 4755 CTCCAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCAT 4802 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| |||| ||| | ||| || ||||||||||| || ||||||||||| Sbjct 4804 CCCCCTCTGAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4863 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| || || || | | ||||||||| || || Sbjct 4864 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGGAGGA 4923 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | ||||| | ||||| Sbjct 4924 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 4983 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || || || | || || ||||| || ||||||||| Sbjct 4984 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTG 5034 Score = 82.4 bits (90), Expect = 8e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 || || || || || |||| ||| | ||| || ||||| ||||| || ||||||||||| Sbjct 4345 TTACCACCCCTCAGGCGCAGCACTAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 4404 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | |||| | || || ||||| ||||| || || || | | ||||||||| || Sbjct 4405 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGGA 4464 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || |||||||| || || || || || ||||| || | ||||| | || Sbjct 4465 GGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCA 4524 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || ||||| | || || || || || ||||| Sbjct 4525 ACTTCCAGGGTGATTGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4574 >seq15821 Length=35697 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || ||||| || |||||||| ||||| |||||||||||| | |||| || Sbjct 931 AGGCGCAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGA 872 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| | ||||||||| || || |||||||| Sbjct 871 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 812 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | ||||| | ||||| ||||| || Sbjct 811 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTG 752 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| | || || || || || ||||| Sbjct 751 ATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 714 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| |||||| || || ||||||||||| || ||||||||||| Sbjct 712 CCACCTCTCAGGCGCAGCACGAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 653 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||| |||||||| | | ||||||||| || || Sbjct 652 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGATCAGGGGGA 593 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | ||||| | ||||| Sbjct 592 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACT 533 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || ||||| ||||| Sbjct 532 TCAAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACAAAAATCTGCAT 486 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || ||||| || |||||||| ||||| ||||||||||| Sbjct 484 CCCCCCCTCAGGCGCAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAC 425 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || || ||||| ||||| || || || | ||||||||| || || Sbjct 424 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGTGCAGCCTCTGCTGATCAGGGGGA 365 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | ||||| | ||||| Sbjct 364 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 305 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || ||||| || || || | || || || || || ||||| ||| Sbjct 304 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505028151449640