Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq40891 107 2e-18 seq8464 107 2e-18 >seq40891 Length=31075 Score = 107 bits (118), Expect = 2e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 ||||||| ||| | ||||||| || ||||| ||||| || || |||||||| ||||| | Sbjct 967 AAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAACA 1026 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 | ||||| ||||||||||||||||| || || || ||||| |||||| Sbjct 1027 TACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATTAAAGAT 1073 >seq8464 Length=80123 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || ||||| |||||| ||||||||| ||| Sbjct 5084 TGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTACGTTGTAAATGGTGAATTGT 5143 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| || || || || ||||||||||| || || || || || || | Sbjct 5144 CTTGCCAACTTTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 5203 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || |||||||| || || || Sbjct 5204 GCTATTCACTGCTCACATACATGATTGCCCATGTCAC 5240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397172107985035