Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq15821 95.1 1e-14 seq5826 91.5 1e-13 >seq15821 Length=35697 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || |||||||| || ||||||||| || | |||| | ||||| ||||| || || Sbjct 910 GTGGATTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTGCCA 851 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || | ||| ||||| || || | || || || || ||||||| ||| Sbjct 850 GCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 791 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| ||| || || || || || || | ||||| ||||| || Sbjct 790 ACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 731 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 730 TTCACAAAGATCTGCAT 714 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || |||||||| || |||||||| || | |||| | ||||| ||||| || || Sbjct 454 GTGGATTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCA 395 Query 27111 GCGTAAATG-AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| || || || | ||| ||||| || || | || || || || ||||||| || Sbjct 394 GCG-AAGTGCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 336 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | || | ||||| ||| || || || || || || | ||||| ||||| || Sbjct 335 CACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 276 Query 27230 TTTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 275 CTTCACAAAGATCTGCAT 258 >seq5826 Length=5185 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| || || || | || || || || || || |||||||| || | ||||| | Sbjct 4360 CGCAGCACTAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 4419 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || ||| | ||||| | ||| ||||| || || | || || || Sbjct 4420 TCTTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTG 4479 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| || | | || | ||||| ||| |||||||| || || || Sbjct 4480 TCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATT 4539 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || ||||||||||| ||||| Sbjct 4540 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4574 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| || | || || || || || || |||||||| || | ||||| || Sbjct 4588 CGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGCCCG 4647 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | || || | ||| || || || || | || || || Sbjct 4648 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTG 4707 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| || | | | || | ||||| ||| || || || || || || Sbjct 4708 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 4767 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| || || || ||||||||||| ||||| Sbjct 4768 GTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCAT 4802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424630880910984