Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq31484 138 1e-27 seq38748 114 2e-20 >seq31484 Length=671 Score = 138 bits (152), Expect = 1e-27 Identities = 193/271 (71%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 13766 CGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCG 13825 |||||| |||||| |||||||||||||||| ||| ||||||| ||||| ||| Sbjct 1 CGCCCCACAGAACATCTACTGCGTCCACGTTGACAGCAAGTCCCCAGACGACTTCCAGGA 60 Query 13826 GGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGA 13885 || ||| ||||||||| |||||||| || || ||||| ||| ||| | | Sbjct 61 GGCCGTGCGGGCCATCGCAGCCTGCTTCCCCAATGTCTTTGTGGCCAGCCGCCTGGAAAA 120 Query 13886 CGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGA 13945 |||||| || | ||||||| ||| ||||||| ||||||| ||||||| ||||||| Sbjct 121 CGTGGTCTATGCCTCCTGGTCCCGCCTGCAGGCTGACCTCAACTGCATGCAGGACCTGCT 180 Query 13946 CGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAA 14005 |||||| |||| ||| | |||||| ||||| | || ||||| |||| Sbjct 181 GCAGAGCCCCGTGCGGTGGCACTACATCCTCAACACCTGCGGCACCGATTTCCCCATCAA 240 Query 14006 GACCAACCTGGAGATCGTGCGGGCGCTGAAG 14036 ||||||| |||||||| || | |||||| Sbjct 241 GACCAACGCCGAGATCGTCCGCACCCTGAAG 271 >seq38748 Length=32182 Score = 114 bits (126), Expect = 2e-20 Identities = 253/374 (68%), Gaps = 28/374 (7%) Strand=Plus/Plus Query 13695 TTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA---TCGAGATGTTCGAGCGCCTC 13751 || |||||||||||| ||| ||| || |||||| | |||| |||||||| ||| Sbjct 16286 TTCCCCATCGCCTAC---ATCATGACCCTGCACAAGGAGTTTGAGACCTTCGAGCGGCTC 16342 Query 13752 CTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTC--CG 13809 | || || |||| || || || |||||||| |||||||||| ||||| | || Sbjct 16343 TTCAGAGCGGTCTATATGCCCCAAAATGTCTACTGCATCCACGTGGATGCCAAGGCGCCG 16402 Query 13810 GCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTG-----CTTCCCTAACGTGGC 13864 || | | | || | ||||| | || |||| |||| |||||| |||| Sbjct 16403 GCCCC-ATTCCAGC--GGGCG----GTGCAGCGCCTGGTGGGCTGCTTCCCCAACGCCTT 16455 Query 13865 CCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC----GCGTGCAGGCCG 13920 ||| ||| |||| | | ||||| || || ||| | | || ||| ||||| Sbjct 16456 CCTCGCCTCCCGGGCGGAGCGGGTGGTCTATGG----TGGCGCCCCCCGCCTGCGGGCCG 16511 Query 13921 ACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACC 13980 ||||| ||||||| |||||| | ||| |||| ||| | |||||||||||| Sbjct 16512 ACCTCCACTGCATGAGAGACCTGCTGGGCTCGGCCGTGCCCTGGCGCTACCTGCTCAACA 16571 Query 13981 TGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCC 14040 ||||| ||||||||| | ||||| |||| ||||||||| ||| |||||||| | Sbjct 16572 CCTGCGGTCAGGACTTCCCCTTGAAGACAAACCGGGAGATCGTCCGGCTGCTGAAGGGTC 16631 Query 14041 TGGGCGGCAAGAAC 14054 | || || |||||| Sbjct 16632 TTGGGGGGAAGAAC 16645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658256615896320