Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq8464 123 2e-23 seq34947 87.8 1e-12 >seq8464 Length=80123 Score = 123 bits (136), Expect = 2e-23 Identities = 141/184 (77%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| ||||||||||| |||||||||||||| || || || ||||||| || Sbjct 1981 CATATCTTTGTATTCTGCTCCGAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 1922 Query 30283 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 ||||| || ||| | || ||| ||| |||||||| || || | || || || || | Sbjct 1921 CCCCTCCTCTCTGGTACT-GAAACCCTGCTTGTCCAGGAACTCACGTGATCCATTAGCAT 1863 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30401 |||| ||||| || ||||| ||||||||||||||| ||||| || || || || || | Sbjct 1862 CCCAAATCTTCACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAAC 1805 Query 30402 ACAG 30405 |||| Sbjct 1804 ACAG 1801 >seq34947 Length=23117 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || |||||| |||| || |||| || || ||| || | | ||| | |||||| || || Sbjct 19984 TTGAGCTCCGTGCTAAGCACTATATTAATTCTGCCTTTTAAAGGACGATTCTTCTCAGGA 20043 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || ||||||||||||||||| | ||||| || ||| Sbjct 20044 ATGGAGAACCAGGTTTTTCTACCCATTATCACTGCATTCTGTTTACCT 20091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406020183527844