Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq8464 95.1 1e-14 >seq8464 Length=80123 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | ||| |||||||| ||||| ||| | || || || || || | Sbjct 1827 CCAAAGAGCTCTCTGCAAAGGGTGTGAAGATTTGGGATGCTAATGGATCACGTGAGTTCC 1886 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 ||||||||| ||| ||| | | |||||||| || ||||| || || || || |||| Sbjct 1887 TGGACAAGCAGGGTTTCAGTACCAGAGAGGAGGGGGATTTGGGACCAGTTTATGGTTTCC 1946 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| ||||| || || || || Sbjct 1947 AGTGGAGGCACTTCGGAGCAGAATA 1971 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || || ||||| ||||||||||| || || || || ||||| || |||||||| Sbjct 1971 TATTCTGCTCCGAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCT 1912 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| ||| |||||||||| || || || || || | ||| ||||| |||||| Sbjct 1911 CTGGTACTGAAACCCTGCTTGTCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTC 1852 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || ||| | |||||||| |||| Sbjct 1851 ACACCCTTTGCAGAGAGCTCTTTGG 1827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447934008569040