Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq15821 93.3 3e-14 seq5826 89.7 3e-13 >seq15821 Length=35697 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || || || ||||| || ||||| || ||| Sbjct 486 ATGCAGATTTTTGTGAAGACCCTGACTGGGAAGACCATCACCCTTGAAGTGGAGCCCAGT 545 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || || ||||| ||||| | || || ||||| Sbjct 546 GACACCATTGAGAATGTGAAGGC-CAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 604 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || |||||||| | |||||| | || ||||| Sbjct 605 GCAGAGGCTTATTTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTGTCTGACTACAA 664 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 665 CATCCAGAAGGAATCCAC 682 >seq5826 Length=5185 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||||| || || || || ||||| || || || || || Sbjct 5033 AAAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 4974 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | || || ||||| ||||| | || ||||| Sbjct 4973 AGTGACACCATTGAGAATGTCAAGGC-TAAGATCCAGGACAAGGAAGGCATTCCTCCAGA 4915 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||| | | || || || ||||| || |||||||| | ||||| | || || Sbjct 4914 TCAGCAGAGGCTCATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTA 4855 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || || ||||| Sbjct 4854 CAACATCCAGAAGGAATCCAC 4834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337768168932356