Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq8464 102 7e-17 seq34947 87.8 1e-12 >seq8464 Length=80123 Score = 102 bits (112), Expect = 7e-17 Identities = 124/164 (76%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 30015 CGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG-TGCTCG 30073 |||| |||||||||||||| || || || ||||||| || ||||| || ||| | || | Sbjct 1961 CGAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCTCTGGTACT-G 1903 Query 30074 AAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTC 30133 || ||| |||||||| || || | || || || || ||||| ||||| || ||||| Sbjct 1902 AAACCCTGCTTGTCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTCACACCCTTT 1843 Query 30134 TCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 | ||||||||||||| ||||| || || || || || ||||| Sbjct 1842 GCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAG 1801 >seq34947 Length=23117 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||| |||| || |||| || | ||| || | | ||| | |||||| || || Sbjct 19984 TTGAGCTCCGTGCTAAGCACTATATTAATTCTGCCTTTTAAAGGACGATTCTTCTCAGGA 20043 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||||||||||||||||| | ||||| |||||| Sbjct 20044 ATGGAGAACCAGGTTTTTCTACCCATTATCACTGCATTCTGTTTACCT 20091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405873088668802