Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq40891 125 6e-24 seq13427 107 2e-18 >seq40891 Length=31075 Score = 125 bits (138), Expect = 6e-24 Identities = 109/134 (81%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 4562 ATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACC 4621 || || |||| | ||||| || || |||||||||||||| || | ||| |||||||| || Sbjct 3168 ATTCATACCT-CATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCC 3110 Query 4622 TCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGC 4681 |||||| || |||||||| || | ||||| || |||||||||||||| ||||| || || Sbjct 3109 TCTCTTCTTCAGCCAAAAAATTGATGCAAAAGAACCAGAAAAGAATATTCCTTCCACTGC 3050 Query 4682 GGCAAACGCTACTA 4695 ||||| ||||||| Sbjct 3049 TGCAAAAGCTACTA 3036 >seq13427 Length=23672 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || || || || | ||| ||||| | || ||||| || Sbjct 10550 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 10491 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| || || |||||||| |||||||| || || ||||| || Sbjct 10490 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 10431 Query 4692 AC 4693 || Sbjct 10430 AC 10429 Score = 105 bits (116), Expect = 6e-18 Identities = 99/125 (79%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 4927 TTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGA 4985 ||||| || | |||||| |||||||| || ||||||||||||||||| |||| ||||||| Sbjct 6335 TTTCTTACCAGGTTTTCATTTACTATTCCATCACTGGCTGCAAAAAATGCCAGAACATGA 6276 Query 4986 GATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAA 5045 || |||||||| | ||| || | || || || |||||||| || | || || | ||| Sbjct 6275 GAGATAAAGTATTTTTCTTCTGCTTTTAGCTTGTTCCAGTGAGGAAGGTCCTTTGACAAA 6216 Query 5046 TCAAC 5050 ||||| Sbjct 6215 TCAAC 6211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426744570081131