Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pterocles_20gutturalis_20[refseq_20GCF_5F000699245.1_202014-06-09] 58,607 sequences; 1,069,324,295 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq40891 116 5e-21 seq37518 89.7 7e-13 seq13427 89.7 7e-13 seq26687 84.2 3e-11 >seq40891 Length=31075 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | |||||||||||| ||||| || ||||||| ||| | || || Sbjct 3159 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTCTTCTTC 3100 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| |||| || ||||| |||||||||||||| ||||| || || ||||| || Sbjct 3099 AGCCAAAAAATTGATGCAAAAGAACCAGAAAAGAATATTCCTTCCACTGCTGCAAAAGC 3041 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 48393 TCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTT 48452 || ||| |||||||| ||| || || || | |||||| |||||||| || || || ||| Sbjct 1081 TCTTTGGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGTTT 1022 Query 48453 TCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 || || || ||||| || || || ||||| | ||||||||||| ||||| || Sbjct 1021 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 969 >seq37518 Length=11320 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 78002 AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATG 78061 |||||| ||||| ||||||||||| ||||| || |||| || || |||| | || || Sbjct 8278 AACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTAGCTCGCTG 8219 Query 78062 TTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGG 78121 ||||| || || || ||||| || | || ||||| || | || || ||||||| || Sbjct 8218 CTCTTCTTTCCCAGTGTTCTTCTTCAAGTCAAGAAATTCAAAGATGTCCAAATGCCACGG 8159 Query 78122 TTCTAGATATATTGCCATAACTCCAGGTC 78150 || ||||| || || | | | ||||||| Sbjct 8158 CTCCAGATAGATGGCAAAAGCCCCAGGTC 8130 >seq13427 Length=23672 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || || || || || || ||||| || || | || || Sbjct 10550 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 10491 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||| || || || || || |||||||| |||||||| || || ||||| || Sbjct 10490 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGC 10432 >seq26687 Length=16082 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| ||||| || | |||| || ||||| || |||||||| || || || | ||| Sbjct 2176 TGAAACTCTCCGGAGAGGACTCGGCGTGTGTAGATGTTACTGGTGTAGGGCTCGATGGAT 2117 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGG 77230 || || || ||||| || ||||| ||||||||||||||||| || Sbjct 2116 TCGTTATTGCCCAAGATCTGAGCGGTAGAAGCAGTTGGCATGGG 2073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694159894320480